CATH Domain: 2qmwA03 XML data for domain: 2qmwA03

Molscript image for 2qmwA03
2qmwA03
PDB coordinates for domain 2qmwA03

PDB 2qmw, Chain A, Domain 3

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.70 Alpha-Beta Plaits
3.30.70.260 Gene3D
3.30.70.260.12
3.30.70.260.12.1
3.30.70.260.12.1.1
3.30.70.260.12.1.1.1
3.30.70.260.12.1.1.1.1

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Segment boundaries for domain 2qmwA03

Chopping figure for domain 2qmwA03
DomainStart PDB ResidueStop PDB Residue
2qmwA01 2 83
2qmwA01 165 175
2qmwA02 84 164
2qmwA03 185 261

Structural Neighbourhood (79 entries)

There are 79 matching structural neighberhood comparisons for CATH ID 3.30.70.260.12.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 79 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2qmxA03 86.70 Prephenate dehydratase [EC:4.2.1.51]Phenylalanine, tyrosine and tryptophan biosynthesisChlorobaculum tepidumMetabolic pathwaysPrephenate dehydratase 3.30.70.260 90 24 80 1.63 2.04
2nzcA00 86.56 Thermotoga maritimaPutative uncharacterized protein 3.30.70.1150 77 12 90 2.69 2.96
1uv7A00 83.72 Vibrio choleraeGeneral secretion pathway protein M 3.30.1360.100 74 16 74 1.95 2.62
1u8sA01 83.25 Glycine cleavage system transcriptional repressor, putativeGlycine cleavage system transcriptional repressorVibrio cholerae 3.30.70.260 86 13 81 2.50 3.07
1q5yD00 82.75 CopG family transcriptional regulator, nickel-responsive regulatorNickel-responsive regulatorProtein bindingEscherichia coli K-12 3.30.70.1150 80 4 86 2.88 3.34
2rhsD06 82.12 Aminoacyl-tRNA biosynthesisStaphylococcus haemolyticus JCSC1435Phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]Phenylalanyl-tRNA synthetase beta chain 3.30.70.380 88 2 78 2.45 3.12
2do0A01 82.12 Protein domain specific bindingIntegral to plasma membraneParaspecklesAlternative nuclear mRNA splicing, via spliceosomeHeterogeneous nuclear ribonucleoprotein M 3.30.70.330 76 9 92 3.47 3.77
1i1gA02 81.81 Pyrococcus furiosusHTH-type transcriptional regulator lrpALrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA 3.30.70.920 77 5 83 3.10 3.73
2w25A02 81.51 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory proteinLeucine-responsive regulatory proteinMycobacterium tuberculosis 3.30.70.920 81 12 79 2.98 3.77
1fxlA02 81.32 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 77 10 88 3.30 3.74
1cvjA01 81.17 Poly(A) RNA bindingTranslation activator activityProtein C-terminus bindingMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 77 5 93 3.77 4.03
1u0sA00 81.10 Thermotoga maritimaBacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Protein binding 3.30.70.1110 86 8 75 2.41 3.19
1vr6A01 81.05 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysThermotoga maritima3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]Phospho-2-dehydro-3-deoxyheptonate aldolase 3.30.70.1140 75 10 84 3.34 3.98
1rwuA00 80.95 Hypothetical proteinUPF0250 protein ybeDEscherichia coli K-12 3.30.70.1460 87 8 81 2.92 3.58
1l3kA02 80.92 Heterogeneous nuclear ribonucleoprotein A1NucleolusProtein bindingCytoplasmSpliceosome 3.30.70.330 78 10 92 3.93 4.26
3cedA00 80.59 ABC transportersD-methionine transport system ATP-binding proteinMethionine import ATP-binding protein MetN 2Staphylococcus aureus subsp. aureus Mu50 3.30.70.260 97 10 75 3.32 4.41
1gmuA01 80.58 Klebsiella aerogenesUrease accessory protein ureE 3.30.70.790 67 13 76 2.84 3.70
1eayD00 80.32 Bacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Escherichia coli K-12Chemotaxis protein cheA 3.30.70.400 69 7 86 3.03 3.51
1lfpA03 80.28 UPF0082 protein aq_1575Aquifex aeolicus 3.30.70.980 73 9 79 3.37 4.24
1in0A01 80.01 Hypothetical proteinHaemophilus influenzaeUPF0234 protein HI_1034 3.30.70.860 70 12 87 3.29 3.75
1earA02 79.71 Sporosarcina pasteuriiUrease accessory protein ureE 3.30.70.790 69 7 76 3.42 4.46
2fgcA03 79.55 Butanoate metabolismC5-Branched dibasic acid metabolismPantothenate and CoA biosynthesisValine, leucine and isoleucine biosynthesisMetabolic pathways 3.30.70.1150 74 5 74 2.95 3.97
1x5oA01 79.43 RNA processingHomo sapiensProtein bindingRNA-binding motif, single-stranded-interacting protein 1 3.30.70.330 86 9 81 3.52 4.32
1rk8A00 79.31 SpliceosomeRNA-binding protein 8AMicrotubule cytoskeleton organizationNucleusDrosophila melanogaster 3.30.70.330 87 8 81 3.37 4.13
2pehA01 79.21 Splicing factor 45SpliceosomeHomo sapiensProtein bindingSplicing factor 45 3.30.70.330 83 6 84 3.54 4.20
1s99A01 79.20 Bacillus subtilisPutative HMP/thiamine-binding protein ykoF 3.30.70.930 77 5 77 2.77 3.55
1s99A02 79.19 Bacillus subtilisPutative HMP/thiamine-binding protein ykoF 3.30.70.930 81 6 75 2.95 3.92
1fjeB01 79.19 NucleolinMesocricetus auratus 3.30.70.330 81 13 85 3.51 4.12
1l3kA01 78.96 Heterogeneous nuclear ribonucleoprotein A1NucleolusProtein bindingCytoplasmSpliceosome 3.30.70.330 84 8 83 3.80 4.56
2errA01 78.90 Fox-1 homolog AProtein C-terminus bindingHomo sapiensTrans-Golgi network 3.30.70.330 83 9 84 3.70 4.39
2x3dF01 78.87 Hypothetical proteinSulfolobus solfataricusPutative uncharacterized protein 3.30.70.1340 84 5 83 2.83 3.40
1fxlA01 78.84 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 71 7 91 3.87 4.22
1x5uA01 78.68 SpliceosomeSpliceosomal complexHomo sapiensSplicing factor 3B subunit 4Splicing factor 3B subunit 4 3.30.70.330 80 12 87 3.13 3.58
2qfjA02 78.56 Homo sapiensPoly(U)-binding-splicing factor PUF60Protein binding 3.30.70.330 87 6 80 3.72 4.62
1oiaA00 78.29 U1 small nuclear ribonucleoprotein ASpliceosomeSpliceosomal complexHomo sapiensProtein binding 3.30.70.330 90 10 76 3.30 4.30
2vooA02 78.21 TRNA modificationNucleolusMRNA bindingProtein bindingLupus La protein 3.30.70.330 89 15 78 3.91 4.97
1h2vZ00 78.19 SpliceosomeMRNA cappingMRNA cap binding complexNuclear-transcribed mRNA catabolic process, nonsense-mediated decayNuclear cap-binding protein subunit 2 3.30.70.330 92 9 76 3.49 4.59
2hiyB01 78.11 Streptococcus pneumoniaePutative uncharacterized protein 3.30.70.1280 87 13 67 3.36 4.95
1no8A00 78.09 THO complex subunit 4Mus musculusSpliceosomeSingle-stranded DNA bindingRNA binding 3.30.70.330 78 12 91 3.94 4.33
2asbA03 78.04 N utilization substance protein ATranscription elongation protein nusAMycobacterium tuberculosis 3.30.300.20 72 6 79 3.34 4.20
1kn6A00 77.95 Mus musculusPeptide hormone processingSerine-type endopeptidase activityNeuroendocrine convertase 1Proprotein convertase subtilisin/kexin type 1 [EC:3.4.21.93] 3.30.70.850 73 5 84 3.17 3.73
1harA02 77.86 Human immunodeficiency virus type 1 BH10Gag-Pol polyprotein 3.30.70.270 69 10 80 3.51 4.34
1jqgA01 77.82 Carboxypeptidase AHelicoverpa armigera 3.30.70.340 91 2 69 2.68 3.87
1rlhA02 77.76 Putative uncharacterized protein Ta1353Thermoplasma acidophilum 3.40.1520.10 101 8 67 2.91 4.32
1nu4A00 77.59 U1 small nuclear ribonucleoprotein ASpliceosomeSpliceosomal complexHomo sapiensProtein binding 3.30.70.330 91 9 71 2.95 4.13
2epiB00 77.53 Methanocaldococcus jannaschiiUPF0045 protein MJ1052 3.30.70.930 96 6 63 2.46 3.87
1l6rA02 77.26 Thermoplasma acidophilumPhosphoglycolate phosphatase 3.90.1070.10 63 9 78 3.40 4.35
1xviA02 77.09 Fructose and mannose metabolismMannosyl-3-phosphoglycerate phosphatase [EC:3.1.3.70]Putative mannosyl-3-phosphoglycerate phosphataseProtein bindingEscherichia coli K-12 3.30.980.20 91 5 64 2.84 4.38
1s1tA02 77.01 HIV-1 M:B_HXB2RGag-Pol polyprotein 3.30.70.270 93 8 67 3.36 4.96
1konA03 77.01 UPF0082 protein yebCEscherichia coli K-12 3.30.70.980 75 4 77 2.95 3.81
3sxlA02 76.92 Sex differentiationDrosophila melanogasterProtein complexPoly-pyrimidine tract bindingImaginal disc growth 3.30.70.330 55 9 65 3.09 4.70
1cvjG02 76.89 Poly(A) RNA bindingProtein C-terminus bindingTranslation activator activityMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 88 15 79 3.82 4.80
1f0xA01 76.78 Pyruvate metabolismD-lactate dehydrogenaseNAD or NADH bindingEscherichia coli K-12D-lactate dehydrogenase [EC:1.1.1.28] 3.30.70.610 100 9 72 3.29 4.57
3c19A01 76.68 Methanopyrus kandleriUncharacterized conserved protein 3.30.70.1380 98 12 73 2.91 3.96
1xmbA02 76.58 Auxin metabolic processArabidopsis thalianaIAA-Ala conjugate hydrolase activityIAA-amino acid hydrolase ILR1-like 2 3.30.70.360 101 5 64 2.75 4.27
3feyB00 76.52 SpliceosomeMRNA cappingMRNA cap binding complexNuclear cap-binding protein subunit 2Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 3.30.70.330 97 8 70 3.21 4.58
2hzcA00 76.49 Splicing factor U2AF 65 kDa subunitSpliceosomeSpliceosomal complexSplicing factor U2AF 65 kDa subunitEnzyme binding 3.30.70.330 87 8 77 3.54 4.60
1sjrA00 76.41 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 108 12 62 2.58 4.10
1fjeB02 76.40 NucleolinMesocricetus auratus 3.30.70.330 84 5 79 3.33 4.17
1wj9A01 76.36 Thermus thermophilus HB8Putative uncharacterized protein TTHB192 3.30.70.1200 87 6 77 3.40 4.41
1ufwA00 76.26 Phosphatidylinositol signaling systemSynaptojanin-2Phosphatidylinositol-bisphosphatase [EC:3.1.3.36]Homo sapiensInositol phosphate metabolism 3.30.70.330 95 5 69 3.43 4.94
2wriY03 76.16 Thermus thermophilus HB8Elongation factor GElongation factor EF-G [EC:3.6.5.3] 3.30.70.870 76 6 84 3.82 4.54
1jmtA00 76.13 Spliceosomal complexSplicing factor U2AF 35 kDa subunitCajal bodyHomo sapiensProtein binding 3.30.70.330 98 5 73 3.44 4.68
1u7lA01 76.10 V-type H+-transporting ATPase subunit C [EC:3.6.3.14]Oxidative phosphorylationVacuolar acidificationProtein bindingVacuolar proton-transporting V-type ATPase, V1 domain 3.30.70.1180 91 9 70 3.27 4.65
1utaA00 75.90 Membrane fractionCell cycle cytokinesisCell division protein FtsNCell division protein ftsNProtein binding 3.30.70.1070 77 6 81 3.56 4.35
2ia0B02 75.80 Pyrococcus furiosusUncharacterized HTH-type transcriptional regulator PF0864 3.30.70.920 99 5 65 2.73 4.16
1lfwA03 75.78 Lactobacillus delbrueckii subsp. lactisBeta-Ala-Xaa dipeptidase 3.30.70.360 88 6 70 3.16 4.49
1mw7A03 75.55 Helicobacter pyloriUPF0082 protein HP_0162 3.30.70.980 75 9 85 4.22 4.95
1ylqA00 75.43 Archaeoglobus fulgidusPutative uncharacterized protein 3.30.460.10 92 6 67 3.34 4.96
1r8hA00 75.41 Human papillomavirus type 6aRegulatory protein E2 3.30.70.330 87 9 78 3.48 4.45
2bopA00 75.13 Regulatory protein E2Bovine papillomavirus type 1 3.30.70.330 85 8 78 3.84 4.87
2pn6A02 75.10 150aa long hypothetical transcriptional regulatorSulfolobus tokodaii 3.30.70.920 98 6 68 2.98 4.36
1m1hA01 74.85 Transcriptional antiterminator NusGTranscription antitermination protein nusGAquifex aeolicus 3.30.70.940 100 5 67 3.03 4.52
1yqhB00 74.78 IG hypothetical 16092Bacillus cereus ATCC 14579 3.30.70.930 98 6 61 2.72 4.44
1whvA00 74.40 Mus musculusPoly(A)-specific ribonuclease PARN 3.30.70.330 100 9 62 3.03 4.89
1nzaA00 74.17 Thermus thermophilus HB8Divalent-cation tolerance protein cutAPeriplasmic divalent cation tolerance protein 3.30.70.830 103 10 68 3.40 4.93
2vqeJ00 73.84 RibosomeThermus thermophilus HB8Small subunit ribosomal protein S1030S ribosomal protein S10 3.30.70.600 98 13 74 3.30 4.43
1qm9A01 73.53 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 98 9 70 3.29 4.67
2od4B01 73.29 3.30.70.900 81 4 80 3.80 4.74
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Displaying entries 1 to 79 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2qmwA03
SLFLITPHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGYRFFVQADSAITTDIKKVIAILETLDFKVEIG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2qmwA03
SLXFLITPXHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGXYRFFVQADSAITTDIKKVIAILETLDFKVEXIG
BLAST against CATH

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Domain History Events (9)

Domain assigned by auto on 14 Feb 2008 17:42

Assigning to "3.30.70.260" based on similarity with "2iq8A03"

Flow stage update by auto on 14 Feb 2008 17:41

No in_process hits for Domain "2qmwA03" ready to be processed

Update comment by auto on 14 Feb 2008 17:25

Domain "2qmwA03" hits Domain "2iq8A03" (94.8051948051948% over 100%) which is currently in process

Update comment by auto on 29 Nov 2007 10:32

Domain "2qmwA03" hits Domain "2iq8B03" (94.8051948051948% over 100%) which is currently in process

Flow stage update by auto on 29 Nov 2007 10:15

Domain "2qmwA03" hits Domain "2iq8B03" (94.8051948051948% over 100%) which is currently in process

Flow stage update by auto on 29 Nov 2007 10:15

NW result present for Domain "2qmwA03"

Flow stage update by auto on 24 Nov 2007 14:38

All required files are present for Domain "2qmwA03"

Flow stage update by auto on 23 Nov 2007 14:01

Beginning processing for Domain "2qmwA03"

Insertion by auto on 23 Nov 2007 11:45

Final ChopClose added based on similarity with "2iq8A"