CATH Domain: 2qjlA00 XML data for domain: 2qjlA00

Molscript image for 2qjlA00
2qjlA00
PDB coordinates for domain 2qjlA00

PDB 2qjl, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.20 Ubiquitin-like (UB roll)
3.10.20.30 Gene3D
3.10.20.30.2
3.10.20.30.2.1
3.10.20.30.2.1.1
3.10.20.30.2.1.1.1
3.10.20.30.2.1.1.1.1

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Segment boundaries for domain 2qjlA00

Chopping figure for domain 2qjlA00
DomainStart PDB ResidueStop PDB Residue
2qjlA00 1 99

Structural Neighbourhood (18 entries)

There are 18 matching structural neighberhood comparisons for CATH ID 3.10.20.30.2.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 18 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1v8cA01 86.72 Threonine synthaseThermus thermophilus 3.10.20.30 85 12 86 1.97 2.29
1vjkA00 85.37 Pyrococcus furiosusMolybdenum cofactor biosynthesis protein DMolybdopterin converting factor, subunit 1 3.10.20.30 87 19 82 2.36 2.84
2k9xA00 84.83 Ubiquitin related modifier 1Trypanosoma bruceiPutative uncharacterized protein 3.10.20.30 102 30 91 2.92 3.20
3cwiA00 79.23 Thiamine biosynthesis ThiSGeobacter metallireducens GS-15ThiS, thiamine-biosynthesis 3.10.20.30 67 16 69 3.11 4.50
1zud400 78.67 Sulfur carrier protein ThiSThiamine biosynthesis ThiSEscherichia coli K-12 3.10.20.30 66 16 68 2.89 4.24
1ryjA00 78.31 Methanothermobacter thermautotrophicus str. Delta HPutative uncharacterized protein 3.10.20.30 70 10 68 3.02 4.44
1p1aA00 77.91 Nucleotide excision repairUV excision repair protein RAD23 homolog BSingle-stranded DNA bindingHomo sapiensUV excision repair protein RAD23 3.10.20.90 85 15 75 3.38 4.47
1wm3A00 76.97 Small ubiquitin-related modifierHomo sapiensSmall ubiquitin-related modifier 2Protein sumoylationProtein binding 3.10.20.90 72 11 68 2.76 4.05
2kd0A01 76.83 LRR repeats and ubiquitin-like domain-containing protein At2g30105Arabidopsis thaliana 3.10.20.90 71 11 67 2.78 4.15
3a4rA00 76.78 Mus musculusNFATC2-interacting proteinRegulation of transcription, DNA-dependentCytokine production 3.10.20.90 79 6 69 2.91 4.21
1yqbA01 76.62 Ubiquilin-3Homo sapiensUbiquilin 3.10.20.90 71 11 68 2.97 4.36
2zeqA00 75.89 Synaptic transmission, glutamatergicLearningAdult locomotory behaviorParkinson's diseaseDopamine metabolic process 3.10.20.90 78 6 74 3.71 4.98
1wh3A01 75.76 CytoplasmDNA binding59 kDa 2'-5'-oligoadenylate synthase-like proteinThyroid hormone receptor bindingNucleolus 3.10.20.90 71 7 68 3.29 4.83
1z2mA02 75.74 RIG-I-like receptor signaling pathwayInterferon-induced 17 kDa proteinISG15-protein conjugationHomo sapiensUbiquitin cross-reactive protein 3.10.20.90 77 11 71 3.43 4.81
2he7A01 75.01 Tight junctionErythrocyte membrane protein band 4.1Homo sapiensBand 4.1-like protein 3Cell-cell junction 3.10.20.90 80 10 71 3.14 4.41
1c1yB00 74.67 RAF proto-oncogene serine/threonine-protein kinaseNeurotrophin signaling pathwayNon-small cell lung cancerT cell receptor signaling pathwayProtein binding 3.10.20.90 77 1 69 3.14 4.54
1s3sH00 73.53 Rattus norvegicusGolgi organizationCellular membrane fusionNSFL1 cofactor p47Protein binding 3.10.20.90 107 8 62 2.86 4.57
1j8cA00 73.27 CytoplasmPlasma membraneHomo sapiensUbiquilinUbiquilin-2 3.10.20.90 103 5 62 2.95 4.75
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Displaying entries 1 to 18 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2qjlA00
MVNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGEK
DYILEDGDIISFTSTLHGG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2qjlA00
MVNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGEK
DYILEDGDIISFTSTLHGG
BLAST against CATH

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Domain History Events (7)

Domain move by cuff on 27 Jun 2008 16:12

COMMENT: Move 2qjlA00 into 3.10.20.30 FINAL: yep - move 2qjlA00 into 3.10.20.30*

Domain assigned by auto on 29 Aug 2007 06:28

Assigning to "3.10.20.90" based on similarity with "2ax5A00"

Flow stage update by auto on 29 Aug 2007 06:13

No in_process hits for Domain "2qjlA00" ready to be processed

Flow stage update by auto on 29 Aug 2007 06:13

NW result present for Domain "2qjlA00"

Flow stage update by auto on 19 Aug 2007 10:13

All required files are present for Domain "2qjlA00"

Flow stage update by auto on 17 Aug 2007 02:51

Beginning processing for Domain "2qjlA00"

Insertion by auto on 17 Aug 2007 02:13

Final ChopClose added based on similarity with "2ax5A"