CATH Domain: 2qifA00 XML data for domain: 2qifA00

Molscript image for 2qifA00
2qifA00
PDB coordinates for domain 2qifA00

PDB 2qif, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.70 Alpha-Beta Plaits
3.30.70.100 Gene3D
3.30.70.100.4
3.30.70.100.4.1
3.30.70.100.4.1.1
3.30.70.100.4.1.1.1
3.30.70.100.4.1.1.1.1

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Segment boundaries for domain 2qifA00

Chopping figure for domain 2qifA00
DomainStart PDB ResidueStop PDB Residue
2qifA00 1 69

Structural Neighbourhood (109 entries)

There are 109 matching structural neighberhood comparisons for CATH ID 3.30.70.100.4.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 109 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1osdA00 94.04 Hypothetical periplasmic mercuric ion binding proteinCupriavidus metallidurans CH34 3.30.70.100 72 34 95 1.33 1.39
3cjkB00 93.63 Cu2+-exporting ATPase [EC:3.6.3.4]Copper-dependent protein bindingCopper-transporting ATPase 1Cellular copper ion homeostasisTrans-Golgi network 3.30.70.100 75 31 92 1.18 1.28
1yjrA00 91.90 Cu2+-exporting ATPase [EC:3.6.3.4]Copper-dependent protein bindingCopper-transporting ATPase 1Cellular copper ion homeostasisTrans-Golgi network 3.30.70.100 75 27 92 1.23 1.34
1mwyA00 90.23 Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5]Detoxification of zinc ionLead, cadmium, zinc and mercury-transporting ATPaseEscherichia coli K-12Response to cadmium ion 3.30.70.100 73 27 91 1.35 1.47
1qupA01 89.90 [EC:4.2.-.-]NucleusProtein bindingSuperoxide dismutase copper chaperone activityCytosol 3.30.70.100 68 16 91 1.69 1.85
2kt2A00 89.51 Mercuric reductasePseudomonas aeruginosaMercuric reductase [EC:1.16.1.1] 3.30.70.100 69 20 95 1.83 1.91
2ofhX00 88.72 Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5]Zinc-transporting ATPaseSynechocystis sp. PCC 6803 3.30.70.100 71 31 97 1.70 1.75
2g9oA00 88.41 Cu2+-exporting ATPase [EC:3.6.3.4]Copper-dependent protein bindingCopper-transporting ATPase 1Trans-Golgi networkCellular copper ion homeostasis 3.30.70.100 77 30 89 2.32 2.59
1opzA00 87.84 Cu2+-exporting ATPase [EC:3.6.3.4]Bacillus subtilisCopper-exporting P-type ATPase A 3.30.70.100 76 30 90 1.52 1.67
1y3jA00 85.17 Cu2+-exporting ATPase [EC:3.6.3.4]Copper-dependent protein bindingCopper-transporting ATPase 1Cellular copper ion homeostasisTrans-Golgi network 3.30.70.100 77 27 89 1.98 2.21
1harA02 84.60 Human immunodeficiency virus type 1 BH10Gag-Pol polyprotein 3.30.70.270 69 8 94 2.81 2.98
2x3dF01 84.53 Hypothetical proteinSulfolobus solfataricusPutative uncharacterized protein 3.30.70.1340 84 17 79 2.40 3.01
1in0A01 83.09 Hypothetical proteinHaemophilus influenzaeUPF0234 protein HI_1034 3.30.70.860 70 5 90 3.02 3.36
1earA02 82.80 Sporosarcina pasteuriiUrease accessory protein ureE 3.30.70.790 69 8 84 3.44 4.09
2f1fA01 82.58 Valine, leucine and isoleucine biosynthesisMetabolic pathwaysButanoate metabolismC5-Branched dibasic acid metabolismPantothenate and CoA biosynthesis 3.30.70.260 79 8 82 2.66 3.23
2qmwA03 81.98 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysPrephenate dehydratase [EC:4.2.1.51]Similar to chorismate mutaseStaphylococcus aureus subsp. aureus Mu50 3.30.70.260 73 8 87 3.37 3.84
2nyiA01 81.97 3.30.70.260 77 20 87 3.93 4.52
2rhsD06 81.90 Aminoacyl-tRNA biosynthesisStaphylococcus haemolyticus JCSC1435Phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]Phenylalanyl-tRNA synthetase beta chain 3.30.70.380 88 10 75 2.41 3.21
1gmuA01 81.88 Klebsiella aerogenesUrease accessory protein ureE 3.30.70.790 67 7 79 2.96 3.71
1y7pB01 81.86 Archaeoglobus fulgidusUncharacterized protein AF_1403 3.30.70.260 80 7 80 2.57 3.21
1vr6A01 81.79 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysThermotoga maritima3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]Phospho-2-dehydro-3-deoxyheptonate aldolase 3.30.70.1140 75 11 82 2.91 3.52
2oauA03 81.46 Small conductance mechanosensitive ion channel, MscS familySmall-conductance mechanosensitive channelMechanically-gated ion channel activityIntegral to membraneEscherichia coli K-12 3.30.70.100 86 10 74 2.05 2.75
1eayD00 81.33 Bacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Escherichia coli K-12Chemotaxis protein cheA 3.30.70.400 69 10 91 3.40 3.72
2ifxA01 81.11 Ralstonia eutropha JMP134Putative uncharacterized protein 3.30.70.100 82 8 81 3.44 4.21
1nm2A01 80.95 Fatty acid biosynthesisStreptomyces coelicolorMalonyl CoA:acyl carrier protein malonyltransferase[acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]Metabolic pathways 3.30.70.250 68 11 84 3.06 3.64
1vi7A02 80.78 IMPACT family member yigZProtein bindingEscherichia coli K-12 3.30.70.240 71 11 88 3.39 3.82
1mlaA01 80.71 Fatty acid biosynthesisMetabolic pathwaysMalonyl CoA-acyl carrier protein transacylase[acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]Escherichia coli K-12 3.30.70.250 73 11 86 3.25 3.77
1u0sA00 80.69 Thermotoga maritimaBacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Protein binding 3.30.70.1110 86 13 75 2.91 3.85
1fjeB01 80.49 NucleolinMesocricetus auratus 3.30.70.330 81 13 79 3.17 4.01
1nh8A03 80.28 Histidine metabolismMetabolic pathwaysATP phosphoribosyltransferaseATP phosphoribosyltransferase [EC:2.4.2.17]Mycobacterium tuberculosis 3.30.70.120 67 11 81 3.56 4.39
1xxaC00 80.24 Transcriptional regulator of arginine metabolismArginine repressorEscherichia coli K-12Plasmid recombination 3.30.1360.40 73 4 75 3.09 4.10
1o8bA02 80.22 Pentose phosphate pathwayMetabolic pathwaysRibose 5-phosphate isomerase A [EC:5.3.1.6]Escherichia coli K-12Ribose-5-phosphate isomerase A 3.30.70.260 69 13 84 3.16 3.76
1dloB02 80.03 Human immunodeficiency virus type 1 BH10Gag-Pol polyprotein 3.30.70.270 93 8 72 2.61 3.62
1mw7A03 80.02 Helicobacter pyloriUPF0082 protein HP_0162 3.30.70.980 75 8 82 3.59 4.34
1i1gA02 79.86 Pyrococcus furiosusHTH-type transcriptional regulator lrpALrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA 3.30.70.920 77 13 83 3.73 4.49
2fgcA03 79.80 Butanoate metabolismC5-Branched dibasic acid metabolismPantothenate and CoA biosynthesisValine, leucine and isoleucine biosynthesisMetabolic pathways 3.30.70.1150 74 7 77 3.23 4.19
2nzcA00 79.61 Thermotoga maritimaPutative uncharacterized protein 3.30.70.1150 77 5 87 3.97 4.56
1lwcB02 79.55 HIV-1 M:B_HXB2RGag-Pol polyprotein 3.30.70.270 87 8 74 2.80 3.75
3ce8A00 79.49 Shewanella baltica OS155Putative uncharacterized protein 3.30.70.120 87 11 73 3.32 4.51
1q5yD00 79.39 CopG family transcriptional regulator, nickel-responsive regulatorNickel-responsive regulatorProtein bindingEscherichia coli K-12 3.30.70.1150 80 11 81 3.65 4.49
1s1tA02 79.31 HIV-1 M:B_HXB2RGag-Pol polyprotein 3.30.70.270 93 10 72 2.73 3.79
1fxlA01 79.29 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 71 5 84 2.84 3.36
1utaA00 79.20 Membrane fractionCell cycle cytokinesisCell division protein FtsNCell division protein ftsNProtein binding 3.30.70.1070 77 5 84 3.14 3.72
2ivyA01 79.02 Sulfolobus solfataricusPutative uncharacterized protein 3.30.70.240 74 7 82 3.93 4.77
1lfpA03 79.02 UPF0082 protein aq_1575Aquifex aeolicus 3.30.70.980 73 10 79 3.88 4.88
1q8bA00 78.90 Bacillus subtilisUncharacterized protein yjcS 3.30.70.900 89 8 76 3.58 4.69
1s2oA02 78.67 Synechocystis sp. PCC 6803Slr0953 protein 3.90.1070.10 71 7 73 3.10 4.23
1xtzA02 78.63 Identical protein bindingNucleusRibose-5-phosphate isomerasePyridoxine biosynthetic processRibose 5-phosphate isomerase A [EC:5.3.1.6] 3.30.70.260 84 10 71 3.19 4.47
2od4B01 78.62 3.30.70.900 81 11 83 3.93 4.68
2zd1A02 78.58 Human immunodeficiency virus type 1 BH10Gag-Pol polyprotein 3.30.70.270 94 8 71 2.68 3.76
2hfvA01 78.51 Rhodopseudomonas palustrisPutative uncharacterized protein 3.30.70.790 77 11 81 3.48 4.25
2nuhA00 78.46 Xylella fastidiosaPeriplasmic divalent cation tolerance proteinPeriplasmic divalent cation tolerance protein 3.30.70.830 104 5 63 2.92 4.60
2nyiA02 78.45 3.30.70.260 89 18 74 2.97 4.00
1nzaA00 78.40 Thermus thermophilus HB8Divalent-cation tolerance protein cutAPeriplasmic divalent cation tolerance protein 3.30.70.830 103 5 62 2.49 4.01
2ia0B02 78.30 Pyrococcus furiosusUncharacterized HTH-type transcriptional regulator PF0864 3.30.70.920 99 14 62 2.81 4.49
2qmxA03 78.26 Prephenate dehydratase [EC:4.2.1.51]Phenylalanine, tyrosine and tryptophan biosynthesisChlorobaculum tepidumMetabolic pathwaysPrephenate dehydratase 3.30.70.260 90 5 74 3.11 4.18
2do0A01 78.24 Protein domain specific bindingIntegral to plasma membraneParaspecklesAlternative nuclear mRNA splicing, via spliceosomeHeterogeneous nuclear ribonucleoprotein M 3.30.70.330 76 13 85 3.23 3.78
3c19A01 78.21 Methanopyrus kandleriUncharacterized conserved protein 3.30.70.1380 98 10 64 2.75 4.28
1u7lA03 78.14 V-type H+-transporting ATPase subunit C [EC:3.6.3.14]Vacuolar acidificationOxidative phosphorylationVacuolar proton-transporting V-type ATPase, V1 domainProtein binding 3.30.70.100 90 14 68 2.68 3.89
2j8sA07 77.91 Hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 familyAcriflavine resistance protein BProtein bindingEscherichia coli K-12 3.30.70.1440 94 10 72 3.46 4.78
2pgcA01 77.87 3.30.70.900 95 2 70 3.39 4.81
2w25A02 77.77 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory proteinLeucine-responsive regulatory proteinMycobacterium tuberculosis 3.30.70.920 81 5 80 3.60 4.49
3dlkB02 77.67 Human immunodeficiency virus type 1 BH10Gag-Pol polyprotein 3.30.70.270 98 8 67 2.98 4.42
2j8sA03 77.54 Hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 familyAcriflavine resistance protein BProtein bindingEscherichia coli K-12 3.30.70.1320 100 8 69 3.19 4.62
1b7yB06 77.53 Aminoacyl-tRNA biosynthesisPhenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]Phenylalanyl-tRNA synthetase beta chainThermus thermophilus 3.30.70.380 86 14 72 3.02 4.19
2vh7A00 77.40 Acylphosphatase activityAcylphosphatase-1Pyruvate metabolismHomo sapiensPhosphate metabolic process 3.30.70.100 94 11 69 2.75 3.98
1xmbA02 77.39 Auxin metabolic processArabidopsis thalianaIAA-Ala conjugate hydrolase activityIAA-amino acid hydrolase ILR1-like 2 3.30.70.360 101 14 68 3.20 4.68
2pn6A02 77.36 150aa long hypothetical transcriptional regulatorSulfolobus tokodaii 3.30.70.920 98 8 63 2.67 4.22
3cj8B02 77.35 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase [EC:2.3.1.117]Lysine biosynthesisMetabolic pathwaysEnterococcus faecalis 3.30.70.250 66 13 72 3.17 4.37
1zpvB00 77.26 ACT domain-containing proteinUPF0237 protein SP_0238Streptococcus pneumoniae 3.30.70.260 81 14 81 3.52 4.32
1x5uA01 76.97 SpliceosomeSpliceosomal complexHomo sapiensSplicing factor 3B subunit 4Splicing factor 3B subunit 4 3.30.70.330 80 11 78 3.30 4.19
2j8sA02 76.93 Hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 familyAcriflavine resistance protein BProtein bindingEscherichia coli K-12 3.30.70.1430 103 10 66 3.31 4.94
1konA03 76.93 UPF0082 protein yebCEscherichia coli K-12 3.30.70.980 75 15 81 3.35 4.12
2j8sA06 76.85 Hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 familyAcriflavine resistance protein BProtein bindingEscherichia coli K-12 3.30.70.1430 105 14 65 3.17 4.82
2gx8C02 76.81 Bacillus cereus ATCC 14579NIF3-related protein 3.30.70.830 102 11 61 2.80 4.53
1u8sA01 76.81 Glycine cleavage system transcriptional repressor, putativeGlycine cleavage system transcriptional repressorVibrio cholerae 3.30.70.260 86 5 77 3.55 4.56
2pehA01 76.71 Splicing factor 45SpliceosomeHomo sapiensProtein bindingSplicing factor 45 3.30.70.330 83 8 80 3.81 4.72
1lfwA02 76.71 Lactobacillus delbrueckii subsp. lactisBeta-Ala-Xaa dipeptidase 3.30.70.360 106 13 63 2.70 4.27
1lfwA03 76.55 Lactobacillus delbrueckii subsp. lactisBeta-Ala-Xaa dipeptidase 3.30.70.360 88 10 61 2.43 3.96
1vk8A00 76.50 Thermotoga maritimaPutative uncharacterized protein 3.30.70.930 91 5 67 3.33 4.97
3bzqA00 76.40 Two-component systemNitrogen regulatory protein P-II 1Nitrogen regulatory protein P-IIMycobacterium tuberculosis 3.30.70.120 99 18 64 3.12 4.83
1r31A01 76.39 Pseudomonas mevalonii3-hydroxy-3-methylglutaryl-coenzyme A reductase 3.30.70.420 110 15 62 3.06 4.88
1cvjA01 76.27 Poly(A) RNA bindingTranslation activator activityProtein C-terminus bindingMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 77 11 81 3.15 3.85
1kr4A00 76.19 Thermotoga maritimaDivalent-cation tolerance protein cutAPeriplasmic divalent cation tolerance protein 3.30.70.830 107 5 59 2.61 4.36
2wriY03 76.16 Thermus thermophilus HB8Elongation factor GElongation factor EF-G [EC:3.6.5.3] 3.30.70.870 76 13 84 4.13 4.90
1fxlA02 76.14 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 77 14 79 3.48 4.39
2pd1A01 76.13 Nitrosomonas europaeaPutative uncharacterized protein 3.30.70.900 93 8 74 3.31 4.46
1ufwA00 76.13 Phosphatidylinositol signaling systemSynaptojanin-2Phosphatidylinositol-bisphosphatase [EC:3.1.3.36]Homo sapiensInositol phosphate metabolism 3.30.70.330 95 10 69 3.43 4.94
1sc6A03 76.11 Glycine, serine and threonine metabolismMetabolic pathwaysD-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]D-3-phosphoglycerate dehydrogenaseEscherichia coli K-12 3.30.70.260 79 10 79 3.84 4.82
1u8sA02 76.05 Glycine cleavage system transcriptional repressor, putativeGlycine cleavage system transcriptional repressorVibrio cholerae 3.30.70.260 84 7 78 3.88 4.94
1rk8A00 75.95 SpliceosomeRNA-binding protein 8AMicrotubule cytoskeleton organizationNucleusDrosophila melanogaster 3.30.70.330 87 10 73 3.41 4.64
1rwuA00 75.71 Hypothetical proteinUPF0250 protein ybeDEscherichia coli K-12 3.30.70.1460 87 11 75 3.72 4.90
2qfjA02 75.42 Homo sapiensPoly(U)-binding-splicing factor PUF60Protein binding 3.30.70.330 87 7 74 3.28 4.39
1l3kA01 75.33 Heterogeneous nuclear ribonucleoprotein A1NucleolusProtein bindingCytoplasmSpliceosome 3.30.70.330 84 10 78 3.60 4.58
1gxuA00 75.22 Carbamoyltransferase hypFHydrogenase maturation protein HypFEscherichia coli K-12 3.30.70.100 88 7 70 2.89 4.10
1l6rA02 75.07 Thermoplasma acidophilumPhosphoglycolate phosphatase 3.90.1070.10 63 7 76 3.62 4.71
2u1aA00 75.06 U1 small nuclear ribonucleoprotein ASpliceosomeSpliceosomal complexHomo sapiensProtein binding 3.30.70.330 88 11 75 3.73 4.97
1cvjH02 74.98 Poly(A) RNA bindingProtein C-terminus bindingMRNA polyadenylationTranslation activator activityPolyadenylate-binding protein 1 3.30.70.330 52 11 60 2.45 4.03
2fyxA00 74.91 Putative transposaseTransposase, putativeDeinococcus radiodurans 3.30.70.1290 130 10 51 2.51 4.87
2o5aA01 74.84 Hypothetical proteinBacillus haloduransBH1328 protein 3.30.460.10 101 11 55 2.55 4.60
1cvjG02 74.78 Poly(A) RNA bindingProtein C-terminus bindingTranslation activator activityMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 88 10 77 3.73 4.83
1qd1A02 74.53 Formimidoyltransferase-cyclodeaminaseOne carbon pool by folateSus scrofaFormiminotetrahydrofolate cyclodeaminase [EC:4.3.1.4]Glutamate formiminotransferase [EC:2.1.2.5] 3.30.70.670 139 8 47 2.13 4.49
3dnjB00 74.40 ATP-dependent Clp protease adaptor protein ClpSCaulobacter vibrioidesATP-dependent Clp protease adapter protein clpS 3.30.1390.10 75 4 78 3.91 4.97
2opsB02 73.45 HIV-1 M:B_HXB2RGag-Pol polyprotein 3.30.70.270 49 4 59 2.74 4.61
2pgcA02 73.32 3.30.70.900 102 7 66 3.31 4.96
1uw4A00 73.31 Regulator of nonsense transcripts 3BNuclear-transcribed mRNA catabolic process, nonsense-mediated decayHomo sapiensProtein binding 3.30.70.330 90 5 74 3.49 4.69
1gx5A03 72.74 Genome polyproteinHepatitis C virus (isolate BK) 3.30.70.270 119 7 55 2.76 4.98
2nocA01 71.73 Salmonella entericaPutative periplasmic protein 3.30.70.1310 71 8 67 3.20 4.73
1sqgA03 71.28 Ribosomal RNA small subunit methyltransferase B [EC:2.1.1.-]Ribosomal RNA small subunit methyltransferase BRRNA (cytosine-C5-)-methyltransferase activityRRNA base methylationEscherichia coli K-12 3.30.70.1170 58 12 81 3.96 4.88
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Displaying entries 1 to 109 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2qifA00
MEQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGYDVAK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2qifA00
MEQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGYDVAK
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 26 Jul 2008 23:27

Assigning to "3.30.70.100" based on similarity with "1k0vA00"

Flow stage update by auto on 26 Jul 2008 23:12

No in_process hits for Domain "2qifA00" ready to be processed

Flow stage update by auto on 26 Jul 2008 23:12

NW result present for Domain "2qifA00"

Flow stage update by auto on 26 Jul 2008 11:49

All required files are present for Domain "2qifA00"

Flow stage update by auto on 25 Jul 2008 19:45

Beginning processing for Domain "2qifA00"

Insertion by auto on 25 Jul 2008 17:22

Final ChopClose added based on similarity with "1k0vA"