CATH Domain: 2qfjA02 XML data for domain: 2qfjA02

Molscript image for 2qfjA02
2qfjA02
PDB coordinates for domain 2qfjA02

PDB 2qfj, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.70 Alpha-Beta Plaits
3.30.70.330 Gene3D
3.30.70.330.11
3.30.70.330.11.1
3.30.70.330.11.1.1
3.30.70.330.11.1.1.1
3.30.70.330.11.1.1.1.1

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Segment boundaries for domain 2qfjA02

Chopping figure for domain 2qfjA02
DomainStart PDB ResidueStop PDB Residue
2qfjA01 100 208
2qfjA02 209 295

Structural Neighbourhood (39 entries)

There are 39 matching structural neighberhood comparisons for CATH ID 3.30.70.330.11.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 39 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2do0A01 91.59 Protein domain specific bindingIntegral to plasma membraneParaspecklesAlternative nuclear mRNA splicing, via spliceosomeHeterogeneous nuclear ribonucleoprotein M 3.30.70.330 76 22 87 1.07 1.22
1fxlA01 91.23 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 71 28 81 0.81 0.99
1fxlA02 91.22 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 77 22 86 0.84 0.97
1cvjA01 90.99 Poly(A) RNA bindingTranslation activator activityProtein C-terminus bindingMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 77 23 88 1.10 1.24
1cvjG02 90.98 Poly(A) RNA bindingProtein C-terminus bindingTranslation activator activityMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 88 22 87 1.04 1.19
1h2vZ00 90.43 SpliceosomeMRNA cappingMRNA cap binding complexNuclear-transcribed mRNA catabolic process, nonsense-mediated decayNuclear cap-binding protein subunit 2 3.30.70.330 92 18 92 2.88 3.12
1x5uA01 90.23 SpliceosomeSpliceosomal complexHomo sapiensSplicing factor 3B subunit 4Splicing factor 3B subunit 4 3.30.70.330 80 27 89 1.21 1.35
1x5oA01 88.89 RNA processingHomo sapiensProtein bindingRNA-binding motif, single-stranded-interacting protein 1 3.30.70.330 86 15 87 1.19 1.36
1oiaA00 88.80 U1 small nuclear ribonucleoprotein ASpliceosomeSpliceosomal complexHomo sapiensProtein binding 3.30.70.330 90 20 87 2.20 2.51
2dgsA01 88.67 CytoplasmDAZ-associated protein 1NucleusRNA bindingHomo sapiens 3.30.70.330 89 22 88 1.63 1.84
2pehA01 88.66 Splicing factor 45SpliceosomeHomo sapiensProtein bindingSplicing factor 45 3.30.70.330 83 15 88 3.88 4.38
3feyB00 88.40 SpliceosomeMRNA cappingMRNA cap binding complexNuclear cap-binding protein subunit 2Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 3.30.70.330 97 18 84 3.99 4.72
1no8A00 87.83 THO complex subunit 4Mus musculusSpliceosomeSingle-stranded DNA bindingRNA binding 3.30.70.330 78 21 89 2.12 2.36
1d8zA00 87.60 Mus musculusAU-rich element bindingELAV like protein 2/3/4ELAV-like protein 3 3.30.70.330 89 27 95 4.16 4.36
2u2fA00 87.06 Splicing factor U2AF 65 kDa subunitSpliceosomeSpliceosomal complexSplicing factor U2AF 65 kDa subunitEnzyme binding 3.30.70.330 85 28 96 4.05 4.19
2errA01 87.06 Fox-1 homolog AProtein C-terminus bindingHomo sapiensTrans-Golgi network 3.30.70.330 83 21 91 2.29 2.49
2jwnA01 85.72 CytoplasmPoly(A) RNA bindingXenopus laevisEmbryonic polyadenylate-binding protein 2-B 3.30.70.330 100 24 76 2.56 3.37
1sjqA00 85.72 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 88 16 92 3.31 3.60
1hl6C00 85.19 SpliceosomeRNA-binding protein 8AMicrotubule cytoskeleton organizationNucleusDrosophila melanogaster 3.30.70.330 111 24 67 1.72 2.55
1jmtA00 84.97 Spliceosomal complexSplicing factor U2AF 35 kDa subunitCajal bodyHomo sapiensProtein binding 3.30.70.330 98 10 78 2.26 2.88
1ufwA00 84.21 Phosphatidylinositol signaling systemSynaptojanin-2Phosphatidylinositol-bisphosphatase [EC:3.1.3.36]Homo sapiensInositol phosphate metabolism 3.30.70.330 95 9 73 2.37 3.22
1fjeB02 84.20 NucleolinMesocricetus auratus 3.30.70.330 84 13 87 2.63 3.01
2u1aA00 81.87 U1 small nuclear ribonucleoprotein ASpliceosomeSpliceosomal complexHomo sapiensProtein binding 3.30.70.330 88 10 84 2.57 3.06
3sxlA02 81.81 Sex differentiationDrosophila melanogasterProtein complexPoly-pyrimidine tract bindingImaginal disc growth 3.30.70.330 55 25 57 1.01 1.76
1fjeB01 81.53 NucleolinMesocricetus auratus 3.30.70.330 81 11 83 2.80 3.34
1qm9A02 81.49 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexMRNA processingNucleolus 3.30.70.330 89 12 85 3.85 4.51
1sxlA00 81.31 Sex differentiationDrosophila melanogasterProtein complexPoly-pyrimidine tract bindingNegative regulation of translation 3.30.70.330 97 27 84 3.63 4.29
1cvjH02 80.23 Poly(A) RNA bindingProtein C-terminus bindingMRNA polyadenylationTranslation activator activityPolyadenylate-binding protein 1 3.30.70.330 52 25 47 0.68 1.44
1konA03 79.43 UPF0082 protein yebCEscherichia coli K-12 3.30.70.980 75 9 77 3.26 4.23
2nzcA00 79.13 Thermotoga maritimaPutative uncharacterized protein 3.30.70.1150 77 6 83 4.16 4.96
1in0A01 79.07 Hypothetical proteinHaemophilus influenzaeUPF0234 protein HI_1034 3.30.70.860 70 8 79 3.06 3.86
1qm9A01 78.74 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 98 13 83 4.02 4.80
1mw7A03 78.71 Helicobacter pyloriUPF0082 protein HP_0162 3.30.70.980 75 13 75 3.48 4.59
1wj9A01 78.34 Thermus thermophilus HB8Putative uncharacterized protein TTHB192 3.30.70.1200 87 3 80 3.96 4.92
2od4B01 78.17 3.30.70.900 81 8 78 3.72 4.76
1kohA01 78.04 Nuclear RNA export factor 1Homo sapiensProtein binding 3.30.70.330 97 9 76 3.18 4.17
1eayD00 77.20 Bacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Escherichia coli K-12Chemotaxis protein cheA 3.30.70.400 69 5 73 2.82 3.83
1vlyA02 76.15 RNA modificationTRNA-modifying protein ygfZFolic acid bindingEscherichia coli K-12 3.30.70.1400 84 1 77 3.75 4.87
2w25A02 76.02 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory proteinLeucine-responsive regulatory proteinMycobacterium tuberculosis 3.30.70.920 81 7 74 3.58 4.79
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Displaying entries 1 to 39 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2qfjA02
NRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTP
PMPLLTP
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2qfjA02
NRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTP
PMPLLTPATPG
BLAST against CATH

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Domain History Events (8)

Domain assigned by auto on 06 Jan 2009 15:40

Assigning to "3.30.70.330" based on similarity with "2jrsA01"

Flow stage update by auto on 06 Jan 2009 15:24

No in_process hits for Domain "2qfjA02" ready to be processed

Update comment by auto on 23 Sep 2008 17:15

Domain "2qfjA02" hits Domain "2qfjA01" (38.4615384615385% over 83.4862385321101%) which is currently in process

Flow stage update by auto on 23 Sep 2008 17:13

Domain "2qfjA02" hits Domain "2qfjA01" (38.4615384615385% over 83.4862385321101%) which is currently in process

Flow stage update by auto on 23 Sep 2008 17:13

NW result present for Domain "2qfjA02"

Flow stage update by auto on 23 Sep 2008 08:17

All required files are present for Domain "2qfjA02"

Flow stage update by auto on 22 Sep 2008 15:12

Beginning processing for Domain "2qfjA02"

Insertion by cuff on 22 Sep 2008 13:20

nice chopping