CATH Domain: 2qdxA01 XML data for domain: 2qdxA01

Molscript image for 2qdxA01
2qdxA01
PDB coordinates for domain 2qdxA01

PDB 2qdx, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.30 Elongation Factor Tu (Ef-tu); domain 3
2.40.30.10 Translation factors Gene3D
2.40.30.10.10
2.40.30.10.10.1
2.40.30.10.10.1.1
2.40.30.10.10.1.1.1
2.40.30.10.10.1.1.1.1

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Segment boundaries for domain 2qdxA01

Chopping figure for domain 2qdxA01
DomainStart PDB ResidueStop PDB Residue
2qdxA01 2 96
2qdxA02 97 258

Structural Neighbourhood (16 entries)

There are 16 matching structural neighberhood comparisons for CATH ID 2.40.30.10.10.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 16 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2piaA01 85.68 Burkholderia cepaciaPhthalate dioxygenase reductase 2.40.30.10 104 17 88 2.05 2.32
1qfjA01 85.42 Porphyrin and chlorophyll metabolismAquacobalamin reductase / NAD(P)H-flavin reductase [EC:1.16.1.3 1.5.1.29]NAD(P)H-flavin reductaseEscherichia coli K-12 2.40.30.10 91 17 89 2.28 2.55
2gpjA01 84.24 Siderophore-interacting proteinShewanella putrefaciens CN-32 2.40.30.10 98 10 93 2.40 2.56
1i8dA01 84.13 Riboflavin metabolismMetabolic pathwaysRiboflavin synthase activityRiboflavin synthase alpha chain [EC:2.5.1.9]Riboflavin synthase alpha chain 2.40.30.20 89 17 87 2.45 2.80
1ep3B01 82.38 Lactococcus lactis subsp. cremoris MG1363Dihydroorotate dehydrogenase electron transfer subunitProtein bindingDihydroorotate dehydrogenase electron transfer subunit 2.40.30.10 99 14 92 2.99 3.22
1ddgA01 81.45 Sulfur metabolismMetabolic pathwaysSulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]Sulfite reductase [NADPH] flavoprotein alpha-componentProtein binding 2.40.30.10 114 18 76 1.89 2.48
1ja1A02 80.84 Rattus norvegicusNitric oxide catabolic processMicrosomeCellular response to peptide hormone stimulusNADPH-ferrihemoprotein reductase [EC:1.6.2.4] 2.40.30.10 122 17 73 2.09 2.83
2rc5B01 80.32 Leptospira interrogansFerredoxin--NADP reductase 2.40.30.10 140 24 67 1.80 2.68
1i8dC02 79.98 Riboflavin metabolismMetabolic pathwaysRiboflavin synthase activityRiboflavin synthase alpha chain [EC:2.5.1.9]Riboflavin synthase alpha chain 2.40.30.20 88 10 76 2.51 3.27
2r6hA01 79.57 Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:1.6.5.-]Porphyromonas gingivalisNADH:ubiquinone oxidoreductase, Na translocating, F subunit 2.40.30.10 138 22 65 2.55 3.87
1kzlA02 79.29 NucleusCytosolSchizosaccharomyces pombeMetabolic pathwaysRiboflavin metabolism 2.40.30.20 101 9 81 2.94 3.62
2ck3D01 78.67 ATP catabolic processParkinson's diseaseOxidative phosphorylationAlzheimer's diseaseMetabolic pathways 2.40.10.170 73 16 76 3.41 4.44
1xe1A00 78.32 Pyrococcus furiosusPutative uncharacterized protein 2.40.30.10 89 10 80 3.90 4.88
2ck3A01 77.21 F-type H+-transporting ATPase subunit alpha [EC:3.6.3.14]Huntington's diseaseOxidative phosphorylationParkinson's diseaseBos taurus 2.40.30.20 70 14 73 3.66 4.97
2d9rA00 75.24 Porphyromonas gingivalisPutative uncharacterized protein 2.40.30.100 82 7 74 3.47 4.64
1pj5A05 74.02 N,N-dimethylglycine oxidaseArthrobacter globiformis 2.40.30.110 78 6 66 3.12 4.70
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Displaying entries 1 to 16 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2qdxA01
SNLYTERVLSVHHWNDTLFSFKTTRNPGLRFKTGQFVMIGLEVDGRPLMRAYSIASPNYEEHLEFFSIKVPDGPLTSRLQ
HLKEGDELMVSRKPT
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2qdxA01
SNLYTERVLSVHHWNDTLFSFKTTRNPGLRFKTGQFVMIGLEVDGRPLMRAYSIASPNYEEHLEFFSIKVPDGPLTSRLQ
HLKEGDELMVSRKPT
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 29 Nov 2007 02:34

Assigning to "2.40.30.10" based on similarity with "1a8pA01"

Flow stage update by auto on 29 Nov 2007 02:20

No in_process hits for Domain "2qdxA01" ready to be processed

Flow stage update by auto on 29 Nov 2007 02:20

NW result present for Domain "2qdxA01"

Flow stage update by auto on 24 Nov 2007 14:38

All required files are present for Domain "2qdxA01"

Flow stage update by auto on 23 Nov 2007 14:01

Beginning processing for Domain "2qdxA01"

Insertion by auto on 23 Nov 2007 11:35

Final ChopClose added based on similarity with "1a8pA"