CATH Domain: 2qdkA00 XML data for domain: 2qdkA00

Molscript image for 2qdkA00
2qdkA00
PDB coordinates for domain 2qdkA00

PDB 2qdk, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.1580 Gene3D
3.40.50.1580.1
3.40.50.1580.1.1
3.40.50.1580.1.1.1
3.40.50.1580.1.1.1.1
3.40.50.1580.1.1.1.1.5

Segment boundaries for domain 2qdkA00

Chopping figure for domain 2qdkA00
DomainStart PDB ResidueStop PDB Residue
2qdkA00 2 253

Structural Neighbourhood (10 entries)

There are 10 matching structural neighberhood comparisons for CATH ID 3.40.50.1580.1.1.1.1.5 (SIMAX score < 5)

Displaying entries 1 to 10 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3emvA01 89.57 Pyrimidine metabolismUridine phosphorylase, putativePlasmodium vivaxUridine phosphorylase [EC:2.4.2.3]Metabolic pathways 3.40.50.1580 241 29 93 1.88 2.02
1vhwA00 89.47 Pyrimidine metabolismPurine metabolismNicotinate and nicotinamide metabolismMetabolic pathwaysPurine-nucleoside phosphorylase [EC:2.4.2.1] 3.40.50.1580 237 25 92 1.78 1.92
1je0C00 88.50 S-methyl-5'-thioadenosine phosphorylase5'-methylthioadenosine phosphorylase [EC:2.4.2.28]Cysteine and methionine metabolismSulfolobus solfataricusMetabolic pathways 3.40.50.1580 227 29 89 1.65 1.85
3bjeA01 84.56 [EC:2.4.2.-]Nucleoside phosphorylase, putativeTrypanosoma brucei 3.40.50.1580 309 22 75 1.81 2.40
1zosA00 83.23 Cysteine and methionine metabolismMetabolic pathwaysS-adenosylhomocysteine/5'-methylthioadenosine nucleosidase [EC:3.2.2.9]5'-methylthioadenosine / S-adenosylhomocysteine nucleosidaseStreptococcus pneumoniae R6 3.40.50.1580 230 16 85 3.26 3.79
2guwC02 82.82 Purine metabolismSalmonella enterica subsp. enterica serovar TyphimuriumAMP nucleosidaseAMP nucleosidase [EC:3.2.2.4] 3.40.50.1580 275 16 82 2.95 3.59
2a8yA00 81.01 5'-methylthioadenosine phosphorylase [EC:2.4.2.28]Cysteine and methionine metabolismSulfolobus solfataricus5'-methylthioadenosine phosphorylase (MtaP)Metabolic pathways 3.40.50.1580 263 12 84 3.30 3.89
1g2oA00 80.95 Pyrimidine metabolismPurine metabolismNicotinate and nicotinamide metabolismMetabolic pathwaysPurine-nucleoside phosphorylase [EC:2.4.2.1] 3.40.50.1580 262 10 85 3.57 4.19
3fucA00 80.06 Purine-nucleoside phosphorylase activityBos taurusPurine nucleoside phosphorylase 3.40.50.1580 273 13 84 3.78 4.45
2gfqB01 72.49 Hypothetical proteinPyrococcus horikoshiiD-tyrosyl-tRNA(Tyr) deacylase 3.40.630.50 184 8 67 3.35 4.97
Displaying entries 1 to 10 (page 1 of 1)


Domain ATOM Sequence

>pdb|2qdkA00
SKSDVFHLGLTKNDLQGAQLAIVPGDPERVEKIAALMDKPVKLASHREFTSWRAELDGKAVIVCSTGIGGPSTSIAVEEL
AQLGIRTFLRIGTTGAIQPHINVGDVLVTTASVRLDGASLHFAPMEFPAVADFACTTALVEAAKSIGATTHVGVTASSDT
FYPGQERYDTYSGRVVRRFKGSMEEWQAMGVMNYEMESATLLTMCASQGLRAGMVAGVIVNRTQQEIPNAETMKQTESHA
VKIVVEAARRLL    

Domain COMBS Sequence

>pdb|2qdkA00
SKSDVFHLGLTKNDLQGAQLAIVPGDPERVEKIAALMDKPVKLASHREFTSWRAELDGKAVIVCSTGIGGPSTSIAVEEL
AQLGIRTFLRIGTTGAIQPHINVGDVLVTTASVRLDGASLHFAPMEFPAVADFACTTALVEAAKSIGATTHVGVTASSDT
FYPGQERYDTYSGRVVRRFKGSMEEWQAMGVMNYEMESATLLTMCASQGLRAGMVAGVIVNRTQQEIPNAETMKQTESHA
VKIVVEAARRLL    

Domain History Events (11)

Domain assigned by auto on 27 Jul 2008 01:21

Assigning to "3.40.50.1580" based on similarity with "2qdkE00"

Flow stage update by auto on 27 Jul 2008 01:20

No in_process hits for Domain "2qdkA00" ready to be processed

Update comment by auto on 27 Jul 2008 00:38

Domain "2qdkA00" hits Domain "2qdkB00" (100% over 100%) which is currently in process

Update comment by auto on 26 Jul 2008 23:51

Domain "2qdkA00" hits Domain "2qdkF00" (100% over 100%) which is currently in process

Update comment by auto on 26 Jul 2008 23:26

Domain "2qdkA00" hits Domain "2qdkD00" (100% over 100%) which is currently in process

Update comment by auto on 26 Jul 2008 20:31

Domain "2qdkA00" hits Domain "2qdkE00" (100% over 100%) which is currently in process

Flow stage update by auto on 26 Jul 2008 20:15

Domain "2qdkA00" hits Domain "2qdkE00" (100% over 100%) which is currently in process

Flow stage update by auto on 26 Jul 2008 20:15

NW result present for Domain "2qdkA00"

Flow stage update by auto on 26 Jul 2008 11:49

All required files are present for Domain "2qdkA00"

Flow stage update by auto on 26 Jul 2008 11:49

Beginning processing for Domain "2qdkA00"

Insertion by auto on 26 Jul 2008 01:51

Final ChopClose added based on similarity with "2i8aA"