CATH Domain: 2qdeA02 XML data for domain: 2qdeA02

Molscript image for 2qdeA02
2qdeA02
PDB coordinates for domain 2qdeA02

PDB 2qde, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.20 Alpha-Beta Barrel
3.20.20 TIM Barrel
3.20.20.120 Enolase superfamily Gene3D
3.20.20.120.14
3.20.20.120.14.1
3.20.20.120.14.1.1
3.20.20.120.14.1.1.1
3.20.20.120.14.1.1.1.1

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Segment boundaries for domain 2qdeA02

Chopping figure for domain 2qdeA02
DomainStart PDB ResidueStop PDB Residue
2qdeA01 3 122
2qdeA01 362 388
2qdeA02 123 361

Structural Neighbourhood (24 entries)

There are 24 matching structural neighberhood comparisons for CATH ID 3.20.20.120.14.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 24 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1tkkA02 87.14 Bacillus subtilisL-Ala-D/L-Glu epimerase 3.20.20.120 244 25 93 1.96 2.10
2qvhA02 86.96 Ubiquinone and other terpenoid-quinone biosynthesisThermobifida fusca YXO-succinylbenzoate-CoA synthaseO-succinylbenzoate synthase [EC:4.2.1.113]Metabolic pathways 3.20.20.120 224 28 90 2.20 2.42
2pgwA02 86.84 Sinorhizobium melilotiToluene and xylene degradationBenzoate degradation via hydroxylationMuconate cycloisomerase [EC:5.5.1.1]Mandelate racemase/muconate lactonizing enzyme family protein 3.20.20.120 215 27 89 1.70 1.91
2oqyA02 86.63 Muconate cycloisomeraseOceanobacillus iheyensis 3.20.20.120 226 26 91 2.32 2.53
2qddA02 85.98 Mandelate racemase/muconate lactonizing enzyme, putativeRoseovarius nubinhibens ISM 3.20.20.120 236 24 93 2.40 2.57
2chrA02 85.59 Ralstonia eutropha JMP134Chloromuconate cycloisomeraseToluene and xylene degradationMuconate cycloisomerase [EC:5.5.1.1]Benzoate degradation via hydroxylation 3.20.20.120 202 22 82 1.71 2.06
3cb3A02 85.54 Toluene and xylene degradationPolaromonas sp. JS666Mandelate racemase [EC:5.1.2.2]Mandelate racemase/muconate lactonizing enzymeBenzoate degradation via hydroxylation 3.20.20.120 233 25 87 2.68 3.06
1yeyB02 85.10 Xanthomonas campestris pv. campestrisRTS beta protein 3.20.20.120 243 21 86 2.16 2.49
2pozH02 85.09 Putative dehydrataseMesorhizobium loti 3.20.20.120 246 22 90 2.35 2.59
2nqlA02 84.80 Agrobacterium tumefaciens str. C58Isomerase/lactonizing enzyme 3.20.20.120 214 16 89 2.26 2.54
2ovlA02 84.66 Toluene and xylene degradationStreptomyces coelicolorMandelate racemase [EC:5.1.2.2]Benzoate degradation via hydroxylationPutative racemase 3.20.20.120 223 22 87 2.44 2.80
2qq6A02 84.53 Rubrobacter xylanophilus DSM 9941Mandelate racemase/muconate lactonizing enzyme-like protein 3.20.20.120 262 28 85 2.42 2.84
1jpdX02 84.16 Racemase and epimerase activity, acting on amino acids and derivativesL-Ala-D/L-Glu epimeraseEscherichia coli K-12 3.20.20.120 207 26 86 2.36 2.74
1mdlA02 84.09 Mandelate racemasePseudomonas putida 3.20.20.120 230 21 90 2.40 2.66
2oqhA02 84.01 Putative isomeraseStreptomyces coelicolor 3.20.20.120 240 22 86 2.38 2.75
2oz8A02 83.71 Mesorhizobium lotiMll7089 protein 3.20.20.120 230 22 89 2.61 2.93
1ec7A02 83.51 Ascorbate and aldarate metabolismD-glucarate catabolic processGlucarate dehydratase activityGlucarate dehydrataseGlucarate dehydratase [EC:4.2.1.40] 3.20.20.120 261 15 85 2.24 2.63
3cyjA02 83.33 Rubrobacter xylanophilus DSM 9941Mandelate racemase/muconate lactonizing enzyme-like proteinToluene and xylene degradationMandelate racemase [EC:5.1.2.2]Benzoate degradation via hydroxylation 3.20.20.120 235 22 90 2.30 2.54
2hzgA02 83.05 Rhodobacter sphaeroides 2.4.1Mandelate racemase/muconate lactonizing enzyme/Enolase superfamily 3.20.20.120 248 22 91 2.87 3.12
3go2A02 82.28 Burkholderia xenovorans LB400Putative uncharacterized protein 3.20.20.120 268 19 82 2.38 2.90
3bjsA02 81.27 Polaromonas sp. JS666Mandelate racemase/muconate lactonizing enzyme 3.20.20.120 250 20 87 2.60 2.97
2podB02 81.21 Mandelate racemase / muconate lactonizing enzymeBurkholderia pseudomallei 3.20.20.120 251 20 86 2.81 3.25
3cawA02 81.11 Ubiquinone and other terpenoid-quinone biosynthesisO-succinylbenzoate synthase [EC:4.2.1.113]Bdellovibrio bacteriovorusMetabolic pathwaysPutative uncharacterized protein 3.20.20.120 225 15 88 3.06 3.45
1r6wA01 80.03 Ubiquinone and other terpenoid-quinone biosynthesisMetabolic pathwaysMenaquinone biosynthetic processO-succinylbenzoate synthaseHydro-lyase activity 3.20.20.120 198 17 81 2.86 3.52
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Displaying entries 1 to 24 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2qdeA02
VYQLLGGKTIERIPLGLVLGAGEPEAVAEEALAVLREGFHFVKLKAGGPLKADIAMVAEVRRAVGDDVDLFIDINGAWTY
DQALTTIRALEKYNLSKIEQPLPAWDLDGMARLRGKVATPIYADESAQELHDLLAIINKGAADGLMIKTQKAGGLLKAQR
WLTLARLANLPVICGCMVGSGLEASPAAHLLAANDWIAQFPQENAGPLHIHDCLNSRDIDNDIALNVPRFEGGYLYPND
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2qdeA02
VYQLLGGKTIERIPLGLVLGAGEPEAVAEEALAVLREGFHFVKLKAGGPLKADIAMVAEVRRAVGDDVDLFIDINGAWTY
DQALTTIRALEKYNLSKIEQPLPAWDLDGMARLRGKVATPIYADESAQELHDLLAIINKGAADGLMIKTQKAGGLLKAQR
WLTLARLANLPVICGCMVGSGLEASPAAHLLAANDWIAQFPQENAGPLHIHDCLNSRDIDNDIALNVPRFEGGYLYPND
BLAST against CATH

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Domain History Events (10)

Domain assigned by auto on 18 Feb 2008 14:30

Assigning to "3.20.20.120" based on similarity with "2qdeH02"

Flow stage update by auto on 18 Feb 2008 14:13

No in_process hits for Domain "2qdeA02" ready to be processed

Update comment by auto on 03 Sep 2007 20:10

Domain "2qdeA02" hits Domain "2qdeH02" (100% over 100%) which is currently in process

Update comment by auto on 03 Sep 2007 11:16

Domain "2qdeA02" hits Domain "2qdeH02" (100% over 100%) which is currently in process

Update comment by auto on 01 Sep 2007 22:04

Domain "2qdeA02" hits Domain "2qdeH02" (100% over 100%) which is currently in process

Flow stage update by auto on 01 Sep 2007 22:03

Domain "2qdeA02" hits Domain "2qdeH02" (100% over 100%) which is currently in process

Flow stage update by auto on 01 Sep 2007 22:03

NW result present for Domain "2qdeA02"

Flow stage update by auto on 24 Aug 2007 10:06

All required files are present for Domain "2qdeA02"

Flow stage update by auto on 23 Aug 2007 18:40

Beginning processing for Domain "2qdeA02"

Insertion by auto on 23 Aug 2007 15:09

Final ChopClose added based on similarity with "2qdeE"