Domain assigned by cuff on 08 Apr 2008 12:42
same superfamily
There are 7 matching structural neighberhood comparisons for CATH ID 3.20.20.140.20.1.1.1.1 (SIMAX score < 5)
>pdb|2qahA00 LTNDERILSWNETPSKPRYTPPPGAIDAHCHVFGPMAQFPFSPKAKYLPRDAGPDMLFALRDHLGFARNVIVQASCHGTD NAATLDAIARAQGKARGIAVVDPAIDEAELAALHEGGMRGIRFNFLKRLVDDAPKDKFLEVAGRLPAGWHVVIYFEADIL EELRPFMDAIPVPIVIDHMGRPDVRQGPDGADMKAFRRLLDSREDIWFKATCPDRLDPAGPPWDDFARSVAPLVADYADR VIWGTDWPHPNMQDAIPDDGLVVDMIPRIAPTPELQHKMLVTNPMRLYWSEEME
>pdb|2qahA00 MSLTNDERILSWNETPSKPRYTPPPGAIDAHCHVFGPMAQFPFSPKAKYLPRDAGPDMLFALRDHLGFARNVIVQASCHG TDNAATLDAIARAQGKARGIAVVDPAIDEAELAALHEGGMRGIRFNFLKRLVDDAPKDKFLEVAGRLPAGWHVVIYFEAD ILEELRPFMDAIPVPIVIDHMGRPDVRQGPDGADMKAFRRLLDSREDIWFKATCPDRLDPAGPPWDDFARSVAPLVADYA DRVIWGTDWPHPNMQDAIPDDGLVVDMIPRIAPTPELQHKMLVTNPMRLYWSEEMEGHHHHHH
same superfamily
SSAP: 75.0 OV: 83 SEQ: 10. Very similar linkage, functionally different.
SSAP: 75.0 OV: 83 SEQ: 10. Very similar linkage, functionally different.
SSAP: 75.0 OV: 83 SEQ: 10. Very similar linkage, functionally different.
User 'tronnberg' has allocated a domain to themselves for HomChecking with comment : Grabbed this domain via HomCheck's "Get Me A Domain" button.
User 'tronnberg' has allocated a domain to themselves for HomChecking with comment : Grabbed this domain via HomCheck's "Get Me A Domain" button.
Domain "2qahA00" SCOP scan with no results - no SCOP mapping
Adding scan of type "DOMAIN_SCAN_SCOP_CATH" with 0 results for 2qahA00
Retrieved PRC_PFAMCATH results for job ID SID4504584959208384 and results inserted.
Adding scan of type "DOMAIN_SCAN_PRC_PFAMCATH" with 32 results for 2qahA00
PRC_PFAMCATH job SID4504584959208384 is not yet finished.
The entry "2qahA00" has been submitted to the PRC_PFAMCATH webservice.
The entry "2qahA00" has been submitted to the PRC_PFAMCATH webservice.
Retrieved SSAP results for job ID SID7022951320580352 and results inserted.
Adding scan of type "DOMAIN_SCAN_SSAP_CATH" with 341 results for 2qahA00
SSAP job SID7022951320580352 is not yet finished.
The entry "2qahA00" has been submitted to the SSAP webservice.
The entry "2qahA00" has been submitted to the SSAP webservice.
Retrieved PRC results for job ID SID3622683506571714 and inserted them into the database.
Adding scan of type "DOMAIN_SCAN_PRC_CATH" with 6 results for 2qahA00
PRC job SID3622683506571714 is not yet finished.
The entry "2qahA00" has been submitted to the PRC webservice.
The entry "2qahA00" has been submitted to the PRC webservice.
Retrieved HMM(SAM) results for job ID SID4088420809087008 and inserted them into the database.
Adding scan of type "DOMAIN_SCAN_SAM_CATH" with 3 results for 2qahA00
HMM(SAM) job SID4088420809087008 is not yet finished.
The entry "2qahA00" has been submitted to the HMM (SAM) webservice.
The entry "2qahA00" has been submitted to the HMM (SAM) webservice.
Retrieved "2qahA00" CATHEDRAL results for job ID SID9914186853370924 and inserted them into the database.
Adding scan of type "DOMAIN_SCAN_CATHEDRAL_CATH" with 130 results for 2qahA00
"2qahA00" CATHEDRAL job SID9914186853370924 is not yet finished.
The entry "2qahA00" has been submitted to the CATHEDRAL webservice.
The entry "2qahA00" has been submitted to the CATHEDRAL webservice.
Unable to insert the domain scan results from "2qahA00" CATHEDRAL job SID4344413035588030.
"2qahA00" CATHEDRAL job SID4344413035588030 is not yet finished.
The entry "2qahA00" has been submitted to the CATHEDRAL webservice.
The entry "2qahA00" has been submitted to the CATHEDRAL webservice.
ScanList with 11650 domains written to "/cath/data/current/scanlists/cathdb_current.fletcher/2qahA00.scanlist" for "2qahA00"
Writing ScanList containing 11650 domains to file "/cath/data/current/scanlists/cathdb_current.fletcher/2qahA00.scanlist" for domain "2qahA00"
Waiting for 43 new domains (example : 2z2eB00) to be processed so that they can be scanned against too.
Waiting for 127 new domains (example : 2z2eB00) to be processed so that they can be scanned against too.
Waiting for 206 new domains (example : 2vfzA00) to be processed so that they can be scanned against too.
Waiting for 257 new domains (example : 2rb8A00) to be processed so that they can be scanned against too.
Waiting for 335 new domains (example : 2r5qA00) to be processed so that they can be scanned against too.
Waiting for 410 new domains (example : 2qluA01) to be processed so that they can be scanned against too.
Waiting for 486 new domains (example : 2o2cB01) to be processed so that they can be scanned against too.
Waiting for 559 new domains (example : 2ihuB03) to be processed so that they can be scanned against too.
Waiting for 634 new domains (example : 2e2gJ02) to be processed so that they can be scanned against too.
Waiting for 665 new domains (example : 1vspE00) to be processed so that they can be scanned against too.
Waiting for 642 new domains (example : 1vspE00) to be processed so that they can be scanned against too.
Waiting for 633 new domains (example : 1vspE00) to be processed so that they can be scanned against too.
Waiting for 582 new domains (example : 1vspE00) to be processed so that they can be scanned against too.
Waiting for 555 new domains (example : 1vspE00) to be processed so that they can be scanned against too.
Waiting for 492 new domains (example : 1vspE00) to be processed so that they can be scanned against too.
Waiting for 574 new domains (example : 1vspE00) to be processed so that they can be scanned against too.
Waiting for 624 new domains (example : 1vspE00) to be processed so that they can be scanned against too.
Waiting for 698 new domains (example : 1vspE00) to be processed so that they can be scanned against too.
Waiting for 787 new domains (example : 1vspE00) to be processed so that they can be scanned against too.
Waiting for 869 new domains (example : 1vspE00) to be processed so that they can be scanned against too.
Waiting for 942 new domains (example : 1vspE00) to be processed so that they can be scanned against too.
Waiting for 1001 new domains (example : 1vspE00) to be processed so that they can be scanned against too.
Waiting for 1059 new domains (example : 1vspE00) to be processed so that they can be scanned against too.
Waiting for 1133 new domains (example : 1vspE00) to be processed so that they can be scanned against too.
Waiting for 1234 new domains (example : 1vspE00) to be processed so that they can be scanned against too.
Waiting for 1324 new domains (example : 1vspE00) to be processed so that they can be scanned against too.
Waiting for 1411 new domains (example : 1vspE00) to be processed so that they can be scanned against too.
Waiting for 1402 new domains (example : 1vspE00) to be processed so that they can be scanned against too.
Waiting for 1512 new domains (example : 2e2gA01) to be processed so that they can be scanned against too.
Moving these domains back to write scan list as we want to avoid any problems caused by the remediation that occurred whilst they were progressing through their scans.
PRC_PFAMCATH job SID8242334586968480 is not yet finished.
The entry "2qahA00" has been submitted to the PRC_PFAMCATH webservice.
The entry "2qahA00" has been submitted to the PRC_PFAMCATH webservice.
Unable to retrieve "2qahA00" PRC_PFAMCATH results for job "SID2020769381982760"
PRC_PFAMCATH job SID2020769381982760 is not yet finished.
The entry "2qahA00" has been submitted to the PRC_PFAMCATH webservice.
The entry "2qahA00" has been submitted to the PRC_PFAMCATH webservice.
Giving up on PRC_PFAMCATH job SID5006186567174482 because submission time of Wed Nov 21 22:16:28 2007 is more than 345600 seconds older than current time (Sun Nov 25 22:30:29 2007).
PRC_PFAMCATH job SID5006186567174482 is not yet finished.
The entry "2qahA00" has been submitted to the PRC_PFAMCATH webservice.
The entry "2qahA00" has been submitted to the PRC_PFAMCATH webservice.
Retrieved SSAP results for job ID SID1510749297619136 and results inserted.
Adding scan of type "DOMAIN_SCAN_SSAP_CATH" with 334 results for 2qahA00
SSAP job SID1510749297619136 is not yet finished.
The entry "2qahA00" has been submitted to the SSAP webservice.
The entry "2qahA00" has been submitted to the SSAP webservice.
Giving up on SSAP job SID6387826568965184 because submission time of Wed Nov 14 02:23:56 2007 is more than 345600 seconds older than current time (Sun Nov 18 06:16:46 2007).
SSAP job SID6387826568965184 is not yet finished.
The entry "2qahA00" has been submitted to the SSAP webservice.
The entry "2qahA00" has been submitted to the SSAP webservice.
Unable to retrieve "2qahA00" SSAP results for job "SID0360176200447616"
SSAP job SID0360176200447616 is not yet finished.
The entry "2qahA00" has been submitted to the SSAP webservice.
The entry "2qahA00" has been submitted to the SSAP webservice.
Unable to retrieve "2qahA00" SSAP results for job "SID9292304179391120"
SSAP job SID9292304179391120 is not yet finished.
The entry "2qahA00" has been submitted to the SSAP webservice.
The entry "2qahA00" has been submitted to the SSAP webservice.
Giving up on SSAP job SID2942470808108576 because submission time of Sun Sep 9 22:52:24 2007 is more than 345600 seconds older than current time (Sat Sep 15 08:27:35 2007).
SSAP job SID2942470808108576 is not yet finished.
The entry "2qahA00" has been submitted to the SSAP webservice.
The entry "2qahA00" has been submitted to the SSAP webservice.
Giving up on SSAP job SID6573963550407324 because submission time of Wed Sep 5 19:02:29 2007 is more than 345600 seconds older than current time (Sun Sep 9 20:23:11 2007).
SSAP job SID6573963550407324 is not yet finished.
The entry "2qahA00" has been submitted to the SSAP webservice.
The entry "2qahA00" has been submitted to the SSAP webservice.
Retrieved PRC results for job ID SID9359947945999488 and inserted them into the database.
Adding scan of type "DOMAIN_SCAN_PRC_CATH" with 6 results for 2qahA00
The entry "2qahA00" has been submitted to the PRC webservice.
The entry "2qahA00" has been submitted to the PRC webservice.
Retrieved HMM(SAM) results for job ID SID3124868418963712 and inserted them into the database.
Adding scan of type "DOMAIN_SCAN_SAM_CATH" with 3 results for 2qahA00
HMM(SAM) job SID3124868418963712 is not yet finished.
The entry "2qahA00" has been submitted to the HMM (SAM) webservice.
The entry "2qahA00" has been submitted to the HMM (SAM) webservice.
Retrieved "2qahA00" CATHEDRAL results for job ID SID6711537078760768 and inserted them into the database.
Adding scan of type "DOMAIN_SCAN_CATHEDRAL_CATH" with 129 results for 2qahA00
The entry "2qahA00" has been submitted to the CATHEDRAL webservice.
The entry "2qahA00" has been submitted to the CATHEDRAL webservice.
ScanList with 11099 domains written to "/cath/data/current/scanlists/cathdb_current.fletcher/2qahA00.scanlist" for "2qahA00"
Writing ScanList containing 11099 domains to file "/cath/data/current/scanlists/cathdb_current.fletcher/2qahA00.scanlist" for domain "2qahA00"
Waiting for 18 new domains (example : 2qg4C01) to be processed so that they can be scanned against too.
Waiting for 73 new domains (example : 2q3eK03) to be processed so that they can be scanned against too.
Waiting for 140 new domains (example : 2q08A02) to be processed so that they can be scanned against too.
Waiting for 188 new domains (example : 2o3jA01) to be processed so that they can be scanned against too.
Waiting for 279 new domains (example : 2b43C04) to be processed so that they can be scanned against too.
Waiting for 351 new domains (example : 1sh0B02) to be processed so that they can be scanned against too.
Waiting for 431 new domains (example : 1r0kA03) to be processed so that they can be scanned against too.
Waiting for 551 new domains (example : 1bplB01) to be processed so that they can be scanned against too.
Waiting for 607 new domains (example : 1bplB01) to be processed so that they can be scanned against too.
Waiting for 686 new domains (example : 1bplB01) to be processed so that they can be scanned against too.
Waiting for 771 new domains (example : 1bplB01) to be processed so that they can be scanned against too.
Waiting for 841 new domains (example : 1bplB01) to be processed so that they can be scanned against too.
Waiting for 903 new domains (example : 1bplB01) to be processed so that they can be scanned against too.
Waiting for 969 new domains (example : 1bplB01) to be processed so that they can be scanned against too.
Waiting for 1085 new domains (example : 1bplB01) to be processed so that they can be scanned against too.
Waiting for 1046 new domains (example : 1bo5O01) to be processed so that they can be scanned against too.
Waiting for 1038 new domains (example : 1bo5O01) to be processed so that they can be scanned against too.
Waiting for 1087 new domains (example : 1bo5O01) to be processed so that they can be scanned against too.
Waiting for 1146 new domains (example : 1bo5O01) to be processed so that they can be scanned against too.
Waiting for 1197 new domains (example : 1bo5O01) to be processed so that they can be scanned against too.
Waiting for 1257 new domains (example : 1bo5O01) to be processed so that they can be scanned against too.
Waiting for 1140 new domains (example : 1ii8B01) to be processed so that they can be scanned against too.
No satisfactory AssignClose result found.
No in_process hits for Domain "2qahA00" ready to be processed
NW result present for Domain "2qahA00"
All required files are present for Domain "2qahA00"
Beginning processing for Domain "2qahA00"
nice chopping