CATH Domain: 2py5A04 XML data for domain: 2py5A04

Molscript image for 2py5A04
2py5A04
PDB coordinates for domain 2py5A04

PDB 2py5, Chain A, Domain 4

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.287 Helix Hairpins
1.10.287.690 Helix hairpin bin Gene3D
1.10.287.690.1
1.10.287.690.1.1
1.10.287.690.1.1.1
1.10.287.690.1.1.1.1
1.10.287.690.1.1.1.1.1

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Segment boundaries for domain 2py5A04

Chopping figure for domain 2py5A04
DomainStart PDB ResidueStop PDB Residue
2py5A01 5 188
2py5A02 189 261
2py5A02 426 531
2py5A03 262 359
2py5A04 360 395
2py5A05 396 425
2py5A06 532 575

Structural Neighbourhood (10 entries)

There are 10 matching structural neighberhood comparisons for CATH ID 1.10.287.690.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 10 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2oyqA04 86.10 DNA polymeraseEnterobacteria phage RB69 1.10.287.690 49 25 73 1.33 1.81
1jm0A00 84.18 1.20.5.420 48 5 72 2.53 3.47
2p5oA04 83.35 DNA polymeraseEnterobacteria phage RB69 1.10.287.690 55 27 65 1.57 2.40
1sf9A01 78.19 Bacillus subtilisUncharacterized protein yfhH 1.10.287.880 64 2 53 1.95 3.67
1bsmA01 78.08 Superoxide dismutase [Mn/Fe]Propionibacterium freudenreichii subsp. shermanii 1.10.287.990 64 2 56 2.37 4.21
1wb7A01 77.40 Superoxide dismutase, Fe-Mn family [EC:1.15.1.1]Sulfolobus solfataricusSuperoxide dismutase [Fe] 1.10.287.990 67 2 53 2.35 4.37
2arhA02 77.08 Aquifex aeolicusPutative uncharacterized protein 1.10.287.870 40 5 80 3.42 4.28
2nn4A00 76.23 Bacillus subtilisUncharacterized protein yqgQ 1.10.287.760 62 8 48 2.28 4.71
3hgcA01 75.92 Amiloride-sensitive cation channel 2, neuronalAmiloride-sensitive cation channel 2, neuronalGallus gallus 1.10.287.770 56 5 64 2.87 4.46
1no4C00 75.86 Bacillus phage phi29Head morphogenesis protein 1.20.5.400 73 16 49 2.01 4.08
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Displaying entries 1 to 10 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2py5A04
FKDFIDKWTYIKTTSEGAIKQLAKLMLNSLYGKFAS
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2py5A04
FKDFIDKWTYIKTTSEGAIKQLAKLMLNSLYGKFAS
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 28 Aug 2007 18:31

Assigning to "1.10.287.690" based on similarity with "1xhxA04"

Flow stage update by auto on 28 Aug 2007 18:20

No in_process hits for Domain "2py5A04" ready to be processed

Flow stage update by auto on 28 Aug 2007 18:20

NW result present for Domain "2py5A04"

Flow stage update by auto on 19 Aug 2007 10:13

All required files are present for Domain "2py5A04"

Flow stage update by auto on 16 Aug 2007 17:14

Beginning processing for Domain "2py5A04"

Insertion by auto on 16 Aug 2007 10:19

Final ChopClose added based on similarity with "1xhxA"