CATH Domain: 2pvbA00 XML data for domain: 2pvbA00

Molscript image for 2pvbA00
2pvbA00
PDB coordinates for domain 2pvbA00

PDB 2pvb, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.238 Recoverin; domain 1
1.10.238.10 EF-hand Gene3D
1.10.238.10.3
1.10.238.10.3.1
1.10.238.10.3.1.1
1.10.238.10.3.1.1.1
1.10.238.10.3.1.1.1.1

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Segment boundaries for domain 2pvbA00

Chopping figure for domain 2pvbA00
DomainStart PDB ResidueStop PDB Residue
2pvbA00 1 108

Structural Neighbourhood (12 entries)

There are 12 matching structural neighberhood comparisons for CATH ID 1.10.238.10.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 12 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1ggzA01 81.88 Calcium ion bindingOlfactory transductionCalcium signaling pathwayPhosphatidylinositol signaling systemInsulin signaling pathway 1.10.238.10 76 25 65 2.87 4.37
2f3yA02 81.61 Phosphatidylinositol signaling systemCalcium signaling pathwayOocyte meiosisMelanogenesisInsulin signaling pathway 1.10.238.10 68 33 63 2.04 3.20
1qtxA02 81.56 1.10.238.10 68 35 63 3.07 4.82
1exrA02 81.49 Phosphatidylinositol signaling systemCalmodulinParamecium tetraureliaCalmodulin 1.10.238.10 67 32 62 2.22 3.54
1dtlA02 81.27 Cardiac muscle contractionCalcium signaling pathwayTroponin C, slow skeletal and cardiac musclesGallus gallusTroponin C, slow skeletal and cardiac muscles 1.10.238.10 63 31 58 2.03 3.45
1exrA01 81.09 Phosphatidylinositol signaling systemCalmodulinParamecium tetraureliaCalmodulin 1.10.238.10 76 23 65 3.28 4.99
1g8iB02 80.08 Calcium ion bindingNeuronal calcium sensor 1Homo sapiensProtein binding 1.10.238.10 91 16 63 2.51 3.94
1wdcB01 79.73 Myosin regulatory light chain, striated adductor muscleArgopecten irradians 1.10.238.10 70 24 64 2.95 4.56
1omrA02 77.65 Bos taurusRecoverinRecoverin 1.10.238.10 88 12 58 2.90 4.93
1jfjA01 75.78 Entamoeba histolyticaCalcium-binding protein 1.10.238.10 63 17 58 2.87 4.88
1tizA00 75.60 Calcium-binding protein CMLArabidopsis thalianaPlant-pathogen interactionProbable calcium-binding protein CML34 1.10.238.10 66 25 60 3.01 4.95
2os8B01 73.88 Myosin regulatory light chainPlacopecten magellanicus 1.10.238.10 65 24 59 2.48 4.15
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Displaying entries 1 to 12 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2pvbA00
SFAGLKDADVAAALAACSAADSFKHKEFFAKVGLASKSLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAE
TKAFLADGDKDGDGMIGVDEFAAMIKA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2pvbA00
XSFAGLKDADVAAALAACSAADSFKHKEFFAKVGLASKSLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDA
ETKAFLADGDKDGDGMIGVDEFAAMIKA
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:05

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:05

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:25

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"