CATH Domain: 2pthA00 XML data for domain: 2pthA00

Molscript image for 2pthA00
2pthA00
PDB coordinates for domain 2pthA00

PDB 2pth, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.1470 Gene3D
3.40.50.1470.1
3.40.50.1470.1.1
3.40.50.1470.1.1.1
3.40.50.1470.1.1.1.1
3.40.50.1470.1.1.1.1.1

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Segment boundaries for domain 2pthA00

Chopping figure for domain 2pthA00
DomainStart PDB ResidueStop PDB Residue
2pthA00 1 193

Structural Neighbourhood (1 entries)

There are 1 matching structural neighberhood comparisons for CATH ID 3.40.50.1470.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 1 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1rybA00 90.38 Chloroplastic group IIB intron splicing facilitator CRS2, chloroplasticPeptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]Zea mays 3.40.50.1470 186 32 95 1.96 2.04
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Displaying entries 1 to 1 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2pthA00
TIKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASF
FRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKL
IDEAIDEAARCTEMWFTDGLTKATNRLHAFKAQ
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2pthA00
TIKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASF
FRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKL
IDEAIDEAARCTEMWFTDGLTKATNRLHAFKAQ
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "2pth000" to "2pthA00" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 19:20

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:20

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:42

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"