CATH Domain: 2pp6A01 XML data for domain: 2pp6A01

Molscript image for 2pp6A01
2pp6A01
PDB coordinates for domain 2pp6A01

PDB 2pp6, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.5 Single alpha-helices involved in coiled-coils or other helix-helix interfaces
1.20.5.110 Gene3D
1.20.5.110.17
1.20.5.110.17.1
1.20.5.110.17.1.1
1.20.5.110.17.1.1.1
1.20.5.110.17.1.1.1.1

[top]
Segment boundaries for domain 2pp6A01

Chopping figure for domain 2pp6A01
DomainStart PDB ResidueStop PDB Residue
2pp6A01 -2 21
2pp6A02 23 93

Structural Neighbourhood (118 entries)

There are 118 matching structural neighberhood comparisons for CATH ID 1.20.5.110.17.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 118 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2oarE02 89.67 Large conductance mechanosensitive channel, MscL familyLarge-conductance mechanosensitive channelMycobacterium tuberculosis H37Ra 1.20.5.220 22 0 90 1.73 1.90
1be3K00 88.06 Cardiac muscle contractionCytochrome b-c1 complex subunit 10Oxidative phosphorylationParkinson's diseaseAlzheimer's disease 1.20.5.220 22 0 86 0.56 0.65
1omiA02 87.35 Listeria monocytogenesListeriolysin regulatory protein 1.20.5.460 27 4 77 0.49 0.63
1ozhA03 87.17 Acetolactate synthase, catabolicKlebsiella pneumoniae 1.20.5.740 24 9 87 2.85 3.26
2oarA02 86.35 Large conductance mechanosensitive channel, MscL familyLarge-conductance mechanosensitive channelMycobacterium tuberculosis H37Ra 1.20.5.220 17 11 71 0.43 0.60
1piqA00 84.15 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyGeneral control protein GCN4General control protein GCN4Specific RNA polymerase II transcription factor activity 1.20.5.170 31 14 67 1.04 1.54
2r44A01 84.12 Cytophaga hutchinsonii ATCC 33406MoxR-like ATPase [EC:3.6.3.-]Putative uncharacterized protein 1.20.5.420 26 0 73 1.67 2.29
1fdoA05 83.37 Methane metabolismMetabolic pathwaysGlyoxylate and dicarboxylate metabolismFormate dehydrogenase HFormate dehydrogenase, alpha subunit [EC:1.2.1.2] 1.20.5.460 27 4 70 0.82 1.17
1jmmA01 83.17 Major cell-surface adhesin PAcStreptococcus mutans 1.20.5.250 32 14 65 1.14 1.74
2p1jA02 82.72 Thermotoga maritimaPyrimidine metabolismDNA replicationPurine metabolismMetabolic pathways 1.20.5.140 26 19 80 2.43 3.01
1kmiZ01 82.34 Bacterial chemotaxisChemotaxis protein cheZProtein bindingChemotaxis protein CheZEscherichia coli K-12 1.20.5.590 30 9 60 0.44 0.73
1h8bB00 82.10 TitinOryctolagus cuniculus 1.20.5.510 23 4 82 2.90 3.51
2qjyC01 82.03 Oxidative phosphorylationMetabolic pathwaysRhodobacter sphaeroidesUbiquinol-cytochrome c reductase iron-sulfur subunitUbiquinol-cytochrome c reductase iron-sulfur subunit [EC:1.10.2.2] 1.20.5.510 33 9 63 1.25 1.96
2zxeB01 81.44 1.20.5.170 35 9 60 0.79 1.32
3clqB01 80.89 Enterococcus faecalisPutative uncharacterized protein 1.20.5.220 24 9 79 2.90 3.66
1mslA02 80.57 1.20.5.220 18 0 80 2.15 2.66
1wa9B03 80.08 Regulation of circadian sleep/wake cycle, sleepPeriod circadian proteinNucleusResponse to temperature stimulusNegative regulation of transcription from RNA polymerase II promoter 1.20.5.770 33 4 63 2.38 3.74
1mkmA02 80.08 Thermotoga maritimaTranscriptional regulator, IclR family 1.20.5.640 14 14 61 0.98 1.58
1ow6A01 79.78 Focal adhesion kinase 1Focal adhesionCytoskeletonIntegrin-mediated signaling pathwayHomo sapiens 1.20.5.540 30 4 60 2.23 3.72
1dp5B00 79.41 CytoplasmProtease A inhibitor 3Saccharomyces cerevisiaeVacuolar protein catabolic processProtein binding 1.20.5.140 31 19 54 0.61 1.11
2p1jB02 79.31 Thermotoga maritimaPyrimidine metabolismDNA replicationPurine metabolismMetabolic pathways 1.20.5.140 26 19 80 2.85 3.53
1g2cB00 79.11 Human respiratory syncytial virus strain RSS-2Fusion glycoprotein F0 1.20.5.170 40 4 52 0.93 1.77
2k1aA00 78.76 Integrin alpha 2BIdentical protein bindingPathways in cancerHematopoietic cell lineageDilated cardiomyopathy 1.20.5.930 42 9 50 0.84 1.68
1nafA01 78.64 ADP-ribosylation factor-binding protein GGA1Homo sapiensProtein bindingIntracellular protein transport 1.20.5.170 36 4 52 1.28 2.43
1d66B02 78.48 Regulatory protein GAL4NucleusSequence-specific DNA binding transcription factor activityTranscription activator activityPositive regulation of transcription by galactose 1.20.5.640 15 13 61 0.81 1.31
2qiwA02 78.24 Corynebacterium glutamicumPEP phosphonomutase and related enzymes 1.20.5.510 18 11 71 2.04 2.86
1onvB00 77.83 CTD phosphatase activityProtein dephosphorylationHomo sapiensRNA polymerase II subunit A C-terminal domain phosphataseDNA-directed RNA polymerase activity 1.20.5.670 21 19 85 2.50 2.92
2p7jB01 77.72 Vibrio parahaemolyticusPutative sensory box/GGDEF family protein 1.20.5.170 39 9 53 1.39 2.58
2k9yA00 77.43 ApoptosisIntegral to plasma membraneEphrin type-A receptor 2Homo sapiensEph receptor A2 [EC:2.7.10.1] 1.20.5.510 41 19 51 1.08 2.11
1mqsB00 77.42 Vesicle fusionSyntaxin 5SNAP receptor activityER to Golgi vesicle-mediated transportRetrograde vesicle-mediated transport, Golgi to ER 1.20.5.460 26 9 80 2.83 3.50
1kilE00 77.36 Complexin-1Syntaxin-1 bindingRattus norvegicusDendriteSynaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex 1.20.5.580 41 9 51 1.18 2.30
1nkzB00 77.22 Rhodoblastus acidophilusLight-harvesting protein B-800/850 beta chain 1.20.5.250 41 14 51 1.68 3.28
1m56D00 76.97 Rhodobacter sphaeroidesAa3-type cytochrome c oxidase subunit IV 1.20.5.160 42 14 50 1.43 2.86
2rh0A02 76.88 Mus musculusNudC domain-containing protein 2 1.20.5.740 29 9 68 3.12 4.52
1k04A01 76.85 Focal adhesion kinase 1Focal adhesionIntegrin-mediated signaling pathwayCytoskeletonHomo sapiens 1.20.5.540 38 9 55 2.09 3.78
1j2jB00 76.80 ADP-ribosylation factor-binding protein GGA1Homo sapiensProtein bindingIntracellular protein transport 1.20.5.170 41 4 51 0.90 1.76
1lghB00 76.79 Phaeospirillum molischianumLight-harvesting protein B-800/850 beta 1 chain 1.20.5.250 43 9 48 0.99 2.03
1hj0A00 76.76 Bos taurusThymosin beta-10 1.20.5.520 41 4 51 1.08 2.11
1junA00 76.63 Pathways in cancerChagas diseaseNeurotrophin signaling pathwayB cell receptor signaling pathwayT cell receptor signaling pathway 1.20.5.170 43 9 48 1.05 2.15
1qexA01 76.18 Enterobacteria phage T4Baseplate structural protein Gp9 1.20.5.960 35 14 60 2.26 3.77
3effK02 76.11 Streptomyces lividansVoltage-gated potassium channel 1.20.5.440 45 19 46 0.70 1.50
1kv4A00 76.08 Moricin-1Bombyx mori 1.20.5.750 42 14 50 1.11 2.22
1czqA00 76.00 1.20.5.170 45 4 46 1.22 2.61
1vl2A03 75.96 Thermotoga maritimaArginine and proline metabolismArgininosuccinate synthase [EC:6.3.4.5]Alanine, aspartate and glutamate metabolismArgininosuccinate synthase 1.20.5.470 32 14 65 3.14 4.78
2i8dA02 75.86 Hypothetical proteinLactobacillus casei ATCC 334Putative uncharacterized protein 1.20.5.420 30 4 70 3.43 4.90
1go9A00 75.83 1.20.5.480 39 4 53 1.44 2.67
2o01J01 75.76 Photosystem I reaction center subunit IXSpinacia oleracea 1.20.5.510 25 4 80 3.43 4.29
2v7qJ00 75.72 Protein homodimerization activityNegative regulation of hydrolase activityATPase inhibitor activityBos taurusCalmodulin binding 1.20.5.500 43 9 48 1.19 2.44
2qsiA02 75.60 Putative hydrogenase expression/formation protein hupGHydrogenase-1 operon protein HyaERhodopseudomonas palustris 1.20.5.510 27 4 55 0.81 1.46
1t6aA01 75.57 Geobacillus stearothermophilusRbstp2229 protein 1.20.5.850 43 14 44 0.60 1.36
3c8vA04 75.54 Desulfovibrio desulfuricans subsp. desulfuricans str. G20Putative uncharacterized protein 1.20.5.510 19 0 57 0.61 1.07
1vl2B03 75.22 Thermotoga maritimaArginine and proline metabolismArgininosuccinate synthase [EC:6.3.4.5]Alanine, aspartate and glutamate metabolismArgininosuccinate synthase 1.20.5.470 30 4 66 2.23 3.34
2o1kA00 75.17 Simian rotavirus A/SA11-bothNon-structural glycoprotein 4 1.20.5.430 42 9 50 2.31 4.62
1owaA01 75.15 Structural constituent of cytoskeletonSpectrinHomo sapiensSpectrin-associated cytoskeletonActin filament organization 1.20.5.170 32 14 65 2.48 3.78
2pjuD03 74.54 Positive regulation of gene-specific transcriptionPropionate catabolism operon regulatory proteinNegative regulation of gene-specific transcriptionEscherichia coli K-12Specific transcriptional repressor activity 1.20.5.170 41 9 51 1.61 3.14
1h3oA00 74.43 General RNA polymerase II transcription factor activityTranscription coactivator activityBasal transcription factorsTranscription factor TFIID complexCytoplasm 1.10.20.10 48 9 43 0.62 1.42
3kpeA00 73.94 Fusion glycoprotein F0Human respiratory syncytial virus A2 1.20.5.300 47 4 44 2.04 4.57
1xrdA01 73.89 Light-harvesting complex 1 alpha chainRhodospirillum rubrumLight-harvesting protein B-870 alpha chain 1.20.5.890 43 19 48 1.66 3.40
1m7lA00 73.89 Negative regulation of T cell proliferationProtein bindingInnate immune responseLung alveolus developmentEndocytic vesicle 1.20.5.360 40 9 52 1.88 3.58
2rklB00 73.76 Multivesicular bodyVacuolar protein sorting-associated protein VTA1Membrane fractionProtein bindingEndocytosis 1.20.5.420 50 9 42 1.21 2.88
1ci6B00 73.63 Mammary gland epithelial cell differentiationMammary gland epithelial cell proliferationCytoplasmProtein heterodimerization activitySequence-specific enhancer binding RNA polymerase II transcription factor activity 1.20.5.170 47 4 44 1.35 3.02
1hf9A00 73.32 Protein homodimerization activityNegative regulation of hydrolase activityATPase inhibitor activityBos taurusATPase binding 1.20.5.500 41 4 43 1.08 2.46
2zjsE00 73.25 Protein exportBacterial secretion systemThermus thermophilus HB8Preprotein translocase subunit secEPreprotein translocase subunit SecE 1.20.5.1030 46 4 45 1.35 2.96
1gk6B00 73.20 Positive regulation of RNA polymerase II transcriptional preinitiation complex assemblyIntermediate filamentVimentinCytosolPositive regulation of gene-specific transcription from RNA polymerase II promoter 1.20.5.170 52 19 40 0.95 2.35
1ik7A00 73.14 Regulation of proteolysisProtein domain specific bindingHemocyte proliferationPlasma membraneZygotic specification of dorsal/ventral axis 1.20.5.530 52 19 40 0.96 2.38
1ifpA00 72.86 Pseudomonas phage Pf3Capsid protein G8P 1.20.5.440 44 9 43 1.01 2.34
3b4sA02 72.85 Vibrio parahaemolyticusLuxT 1.20.5.830 41 9 46 2.19 4.73
1s5lH00 72.82 PhotosynthesisThermosynechococcus elongatus BP-1Photosystem II PsbH proteinPhotosystem II reaction center protein HMetabolic pathways 1.20.5.880 53 4 39 0.74 1.87
2idbC03 72.75 Ubiquinone and other terpenoid-quinone biosynthesisMetabolic pathways3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD [EC:4.1.1.-]3-octaprenyl-4-hydroxybenzoate carboxy-lyase 1.20.5.570 21 0 100 4.69 4.69
3bz1H01 72.61 PhotosynthesisThermosynechococcus elongatus BP-1Photosystem II PsbH proteinPhotosystem II reaction center protein HMetabolic pathways 1.20.5.880 51 4 41 1.06 2.57
1byyA00 72.60 Initial segmentVoltage-gated sodium channel complexRattus norvegicusSodium channel protein type 2 subunit alphaSodium ion transport 1.20.5.150 21 14 85 4.07 4.75
1a02F00 72.36 Promoter bindingPathways in cancerChagas diseaseProto-oncogene protein c-fosB cell receptor signaling pathway 1.20.5.170 53 9 39 1.16 2.93
3e7kA00 72.11 Rattus norvegicusCalcium channel activityCalcium ion transportIntegral to membraneProtein binding 1.20.5.1010 54 0 38 0.92 2.37
2p10B02 71.73 Mesorhizobium lotiMll9387 protein 1.20.5.460 26 19 50 1.16 2.32
1gmjD00 71.38 Negative regulation of hydrolase activityProtein homodimerization activityATPase inhibitor activityBos taurusCalmodulin binding 1.20.5.500 56 9 37 1.22 3.25
2ga1A01 71.31 Anabaena variabilis ATCC 29413Putative uncharacterized protein 1.20.5.800 29 4 44 1.73 3.86
1pfiA00 71.29 Pseudomonas phage Pf1Capsid protein G8P 1.20.5.230 46 4 45 1.38 3.02
1l2pA00 70.96 Oxidative phosphorylationMetabolic pathwaysATP synthesis coupled proton transportAnchored to membraneF-type H+-transporting ATPase subunit b [EC:3.6.3.14] 1.20.5.620 61 9 34 0.77 2.24
1dh3A00 70.50 Positive regulation of multicellular organism growthLactationRegulation of cell sizeAxonogenesisMus musculus 1.20.5.170 55 4 38 0.96 2.51
2hr3A01 70.42 Probable transcriptional regulatorPseudomonas aeruginosa 1.20.5.420 30 9 70 3.37 4.81
1rh5B00 69.98 Protein transport protein SEC61 subunit gamma and related proteinsProtein exportMethanocaldococcus jannaschiiPreprotein translocase subunit secE 1.20.5.820 56 9 37 1.08 2.88
1gd2F00 69.95 NuA4 histone acetyltransferase complexFungal AP-1-like factorResponse to hydrogen peroxideResponse to methylglyoxalCellular response to oxidative stress 1.20.5.170 64 4 32 0.85 2.59
1cw5A00 69.68 Carnobacterium maltaromaticumBacteriocin carnobacteriocin B2 1.20.5.130 48 9 43 1.83 4.18
2dw3A01 69.31 Intrinsic membrane protein pufXRhodobacter sphaeroides 2.4.1 1.20.5.920 55 9 38 1.52 3.98
3gf3A01 69.26 Clostridium symbiosumGlutaconyl-CoA decarboxylase subunit A 1.20.5.680 58 9 36 1.51 4.17
1a2xB00 69.25 Troponin I, fast skeletal muscleTroponin T bindingOryctolagus cuniculus 1.20.5.420 31 19 41 0.96 2.29
3fwnA03 69.04 Glutathione metabolismMetabolic pathwaysPentose phosphate pathwayProtein bindingEscherichia coli K-12 1.20.5.320 34 4 44 1.60 3.63
3ii6A02 68.67 DNA ligation involved in DNA repairProtein C-terminus bindingDNA-dependent protein kinase-DNA ligase 4 complexResponse to X-rayDouble-strand break repair via nonhomologous end joining 1.20.5.370 58 14 36 1.38 3.81
2b9bA04 68.64 Simian virus 5 (strain W3)Fusion glycoprotein F0 1.20.5.1070 62 4 33 1.34 3.96
1nwqA00 68.41 Protein domain specific bindingRattus norvegicusAcute-phase responsePathways in cancerOrgan regeneration 1.20.5.170 60 9 35 1.36 3.89
1u57A00 68.35 Human immunodeficiency virus type 1 lw12.3 isolateGag polyprotein 1.20.5.760 48 14 43 2.00 4.57
3cx5E01 68.25 Cytochrome b-c1 complex subunit Rieske, mitochondrialMitochondrial respiratory chain complex IIIOxidative phosphorylationMetabolic pathwaysAerobic respiration 1.20.5.270 55 14 38 1.66 4.35
1k8vA00 68.13 Neuropeptide FMoniezia expansa 1.20.5.570 39 23 53 2.55 4.74
1gu4A00 67.99 Transcription from RNA polymerase II promoterAcute-phase responseHomo sapiensCCAAT/enhancer-binding protein betaImmune response 1.20.5.170 65 4 32 0.90 2.79
1fjkA00 67.89 Calcium signaling pathwayDilated cardiomyopathySus scrofaCardiac phospholambanPhospholamban 1.20.5.290 52 0 40 1.93 4.78
2e42A00 67.88 Transcription from RNA polymerase II promoterAcute-phase responseHomo sapiensCCAAT/enhancer-binding protein betaImmune response 1.20.5.170 65 4 32 0.89 2.75
2g8yA03 67.54 Uncharacterized oxidoreductase [EC:1.1.1.-]Uncharacterized oxidoreductase ybiCEscherichia coli K-12 1.20.5.460 28 14 64 3.08 4.79
1wt6B00 67.42 ATP bindingProtein phosphorylationRegulation of heart contractionHomo sapiensProtein serine/threonine kinase activity 1.20.5.340 67 23 31 1.24 3.96
3b8eB00 67.41 Sodium/potassium-transporting ATPase subunit beta-1Sus scrofa 1.20.5.170 46 9 45 1.80 3.94
1pp9J00 67.15 Cardiac muscle contractionParkinson's diseaseOxidative phosphorylationAlzheimer's diseaseUbiquinol-cytochrome c reductase subunit 9 [EC:1.10.2.2] 1.20.5.260 61 9 34 1.51 4.39
1svfC00 66.96 Simian virus 5 (strain W3)Fusion glycoprotein F0 1.20.5.300 62 9 33 1.41 4.16
3cx5I00 66.89 Mitochondrial respiratory chain complex IIIOxidative phosphorylationIron-sulfur cluster assemblyUbiquinol-cytochrome c reductase subunit 9 [EC:1.10.2.2]Protein binding 1.20.5.260 57 14 36 1.79 4.86
1f8vE00 66.79 Pariacato virusProtein alpha 1.20.5.280 21 0 90 4.09 4.52
2pgdA03 66.58 Ovis aries6-phosphogluconate dehydrogenase, decarboxylating 1.20.5.320 38 4 39 1.63 4.13
1jocA01 66.45 Zinc ion bindingVesicle fusionMembrane fractionSynaptic vesicle to endosome fusionProtein homodimerization activity 1.20.5.390 60 14 30 0.83 2.77
1h5wB01 66.31 Bacillus phage phi29Upper collar protein 1.10.246.30 72 4 29 1.13 3.87
2p2uA01 66.10 Desulfovibrio vulgaris str. HildenboroughHost-nuclease inhibitor protein Gam, putative 1.20.5.170 69 14 30 1.08 3.55
1nknA00 65.83 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyGeneral control protein GCN4General control protein GCN4Positive regulation of gene-specific transcription from RNA polymerase II promoter 1.20.5.340 74 14 28 1.23 4.33
1no4C00 65.66 Bacillus phage phi29Head morphogenesis protein 1.20.5.400 73 4 28 1.19 4.14
1ic2B00 65.60 Gallus gallusTropomyosin alpha-1 chain 1.20.5.340 77 19 27 1.17 4.29
2kluA00 64.18 Zinc ion bindingMaintenance of protein location in cellT-cell surface glycoprotein CD4Signal transductionT cell receptor signaling pathway 1.20.5.900 70 4 30 1.02 3.40
1wmkA03 62.72 Death-associated protein kinase 2Bladder cancerIdentical protein bindingPathways in cancerATP binding 1.20.5.460 28 4 75 3.11 4.15
2v4hB00 62.68 Mus musculusNF-kappa-B essential modulatorActivation of NF-kappaB-inducing kinase activityB cell homeostasis 1.20.5.990 91 9 23 0.87 3.77
2o01N01 62.37 Phaseolus vulgarisPhotosystem I-N subunit 1.20.5.740 22 0 95 3.43 3.59
2zvoB00 61.26 Mus musculusNF-kappa-B essential modulatorActivation of NF-kappaB-inducing kinase activityB cell homeostasis 1.20.5.990 88 23 23 1.04 4.36
3cx5H00 59.94 Mitochondrial respiratory chain complex IIIOxidative phosphorylationCytochrome b-c1 complex subunit 8Metabolic pathwaysAerobic respiration 1.20.5.210 93 9 22 1.01 4.47
1yo7A00 57.86 Regulatory protein ropEscherichia coli 1.20.1440.10 120 4 17 0.50 2.86
1h6gA01 56.47 Pathways in cancerCatenin complexEndometrial cancerCatenin (cadherin-associated protein), alphaLeukocyte transendothelial migration 1.20.120.230 117 4 17 0.84 4.68
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Displaying entries 1 to 118 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2pp6A01
SNAADLFDGKRRDALIAERFG
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|2pp6A01
SNAXADLFDGXKRRXDALIAERFG
BLAST against CATH

[top]
Domain History Events (51)

Domain assigned by cuff on 07 May 2008 14:46

same superfamily

Domain assignment manual match h by cuff on 07 May 2008 14:40

single helix, same function

Domain assignment manual match t by tronnberg on 10 Sep 2007 14:18

SSAP: 88.06 OV: 86 SEQ: 0. Functionally different.

Homcheck review by tronnberg on 10 Sep 2007 14:18

SSAP: 88.06 OV: 86 SEQ: 0. Functionally different.

Flow stage update by tronnberg on 10 Sep 2007 14:18

SSAP: 88.06 OV: 86 SEQ: 0. Functionally different.

Homcheck allotment by tronnberg on 10 Sep 2007 14:10

User 'tronnberg' has allocated a domain to themselves for HomChecking with comment : Grabbed this domain via HomCheck's "Get Me A Domain" button.

Flow stage update by tronnberg on 10 Sep 2007 14:10

User 'tronnberg' has allocated a domain to themselves for HomChecking with comment : Grabbed this domain via HomCheck's "Get Me A Domain" button.

Flow stage update by auto on 07 Sep 2007 17:18

Domain "2pp6A01" SCOP scan with no results - no SCOP mapping

Domain scan scop cath by auto on 07 Sep 2007 17:17

Adding scan of type "DOMAIN_SCAN_SCOP_CATH" with 0 results for 2pp6A01

Flow stage update by auto on 07 Sep 2007 17:09

Retrieved PRC_PFAMCATH results for job ID SID7268216931194072 and results inserted.

Domain scan prc pfamcath by auto on 07 Sep 2007 17:08

Adding scan of type "DOMAIN_SCAN_PRC_PFAMCATH" with 0 results for 2pp6A01

Update comment by auto on 07 Sep 2007 12:05

PRC_PFAMCATH job SID7268216931194072 is not yet finished.

Prc pfamcath submit by auto on 07 Sep 2007 11:45

The entry "2pp6A01" has been submitted to the PRC_PFAMCATH webservice.

Flow stage update by auto on 07 Sep 2007 11:45

The entry "2pp6A01" has been submitted to the PRC_PFAMCATH webservice.

Flow stage update by auto on 07 Sep 2007 11:29

Retrieved SSAP results for job ID SID5945256268896512 and results inserted.

Domain scan ssap cath by auto on 07 Sep 2007 11:27

Adding scan of type "DOMAIN_SCAN_SSAP_CATH" with 245 results for 2pp6A01

Update comment by auto on 07 Sep 2007 08:49

SSAP job SID5945256268896512 is not yet finished.

Ssap cath submit by auto on 07 Sep 2007 06:35

The entry "2pp6A01" has been submitted to the SSAP webservice.

Flow stage update by auto on 07 Sep 2007 06:35

The entry "2pp6A01" has been submitted to the SSAP webservice.

Flow stage update by auto on 07 Sep 2007 06:34

Retrieved PRC results for job ID SID9611914038413880 and inserted them into the database.

Domain scan prc cath by auto on 07 Sep 2007 06:33

Adding scan of type "DOMAIN_SCAN_PRC_CATH" with 1 results for 2pp6A01

Update comment by auto on 06 Sep 2007 18:17

PRC job SID9611914038413880 is not yet finished.

Flow stage update by auto on 06 Sep 2007 18:17

The entry "2pp6A01" has been submitted to the PRC webservice.

Prc cath submit by auto on 06 Sep 2007 18:17

The entry "2pp6A01" has been submitted to the PRC webservice.

Flow stage update by lewis on 06 Sep 2007 15:37

The SAM_CATH scan for 2pp6A01 returned no results and this doesn't appear to be an error so I am shifting 2pp6A01 on to PRC_CATH_SUBMIT

Update comment by auto on 05 Sep 2007 01:03

SAM job SID2859144228136512 for entry "2pp6A01" returned no results. In an ideal world, all SAM scans would return results. This isn't an ideal world and we're all going to have to deal with that. You need to decide why this SAM scan has returned no results. Is it because there are no good SAM hits or is it because something has gone wrong? SG structures are more likely to have no decent SAM hits than normal structures.

If something has gone wrong, please track down the problem and fix it.

If you are happy that there is no problem, then you may wish to run a command like the following one:

/usr/local/svn/source/update/v3.1.1/utilities/UpdateFlowStage.pl -d cathdb_current -h fletcher -u -p -f SAM_CATH_GATHER -t PRC_CATH_SUBMIT -i 2pp6A01 -m "The SAM_CATH scan for 2pp6A01 returned no results and this doesn't appear to be an error so I am shifting 2pp6A01 on to PRC_CATH_SUBMIT"

Update comment by auto on 04 Sep 2007 13:24

HMM(SAM) job SID2859144228136512 is not yet finished.

Sam cath submit by auto on 04 Sep 2007 10:29

The entry "2pp6A01" has been submitted to the HMM (SAM) webservice.

Flow stage update by auto on 04 Sep 2007 10:29

The entry "2pp6A01" has been submitted to the HMM (SAM) webservice.

Flow stage update by auto on 04 Sep 2007 06:35

Retrieved "2pp6A01" CATHEDRAL results for job ID SID8970145124227840 and inserted them into the database.

Domain scan cathedral cath by auto on 04 Sep 2007 06:34

Adding scan of type "DOMAIN_SCAN_CATHEDRAL_CATH" with 163 results for 2pp6A01

Cathedral cath submit by auto on 03 Sep 2007 14:30

The entry "2pp6A01" has been submitted to the CATHEDRAL webservice.

Flow stage update by auto on 03 Sep 2007 14:30

The entry "2pp6A01" has been submitted to the CATHEDRAL webservice.

Flow stage update by auto on 03 Sep 2007 12:46

ScanList with 11099 domains written to "/cath/data/current/scanlists/cathdb_current.fletcher/2pp6A01.scanlist" for "2pp6A01"

Write scan list by auto on 03 Sep 2007 12:46

Writing ScanList containing 11099 domains to file "/cath/data/current/scanlists/cathdb_current.fletcher/2pp6A01.scanlist" for domain "2pp6A01"

Update comment by auto on 03 Sep 2007 10:11

Waiting for 18 new domains (example : 2qg4C01) to be processed so that they can be scanned against too.

Update comment by auto on 03 Sep 2007 06:32

Waiting for 73 new domains (example : 2q3eK03) to be processed so that they can be scanned against too.

Update comment by auto on 03 Sep 2007 02:37

Waiting for 140 new domains (example : 2q08A02) to be processed so that they can be scanned against too.

Update comment by auto on 02 Sep 2007 22:33

Waiting for 188 new domains (example : 2o3jA01) to be processed so that they can be scanned against too.

Update comment by auto on 02 Sep 2007 18:22

Waiting for 279 new domains (example : 2b43C04) to be processed so that they can be scanned against too.

Update comment by auto on 02 Sep 2007 14:23

Waiting for 351 new domains (example : 1sh0B02) to be processed so that they can be scanned against too.

Update comment by auto on 02 Sep 2007 10:16

Waiting for 431 new domains (example : 1r0kA03) to be processed so that they can be scanned against too.

Update comment by auto on 02 Sep 2007 02:29

Waiting for 551 new domains (example : 1bplB01) to be processed so that they can be scanned against too.

Update comment by auto on 01 Sep 2007 22:13

Waiting for 607 new domains (example : 1bplB01) to be processed so that they can be scanned against too.

Update comment by auto on 01 Sep 2007 18:16

Waiting for 686 new domains (example : 1bplB01) to be processed so that they can be scanned against too.

Flow stage update by auto on 01 Sep 2007 18:10

No satisfactory AssignClose result found.

Flow stage update by auto on 01 Sep 2007 18:04

No in_process hits for Domain "2pp6A01" ready to be processed

Flow stage update by auto on 01 Sep 2007 18:04

NW result present for Domain "2pp6A01"

Flow stage update by auto on 30 Aug 2007 10:04

All required files are present for Domain "2pp6A01"

Flow stage update by auto on 29 Aug 2007 14:34

Beginning processing for Domain "2pp6A01"

Insertion by cuff on 29 Aug 2007 11:17

nice chopping