Domain assigned by cuff on 18 Feb 2008 14:10
same superfamily
| CATH Code | Level Description | Links |
|---|---|---|
3
| Alpha Beta | |
3.40
| 3-Layer(aba) Sandwich | |
3.40.630
| Aminopeptidase | |
3.40.630.10
| Zn peptidases | Gene3D |
3.40.630.10.6
| ||
3.40.630.10.6.1
| ||
3.40.630.10.6.1.1
| ||
3.40.630.10.6.1.1.1
| ||
3.40.630.10.6.1.1.1.1
|
| Domain | Start PDB Residue | Stop PDB Residue |
|---|---|---|
| 2pokA01 | 0 | 200 |
| 2pokA01 | 371 | 457 |
| 2pokA02 | 201 | 370 |
There are 17 matching structural neighberhood comparisons for CATH ID 3.40.630.10.6.1.1.1.1 (SIMAX score < 5)
>pdb|2pokA01 AMVFPSEQEQIEKFEKDHVAQHYFEVLRTLISKKSVFAQQVGLKEVANYLGEIFKRVGAEVEIDESYTAPFVMAHFKSSR PDAKTLIFYNHYDTVPADGDQVWTEDPFTLSVRNGFMYGRGVDDDKGHITARLSALRKYMQHHDDLPVNISFIMEGAEES ASTDLDKYLEKHADKLRGADLLVWEQGTKNALEQLEISGGNYRSDMSAPAILNVIELAKKFYPQGVSVLPTTAGTGPMHT VFDALEVPMVAFGLGNANSRDHGGDENVRIADYYTHIELVEELIRSYE
>pdb|2pokA01 AMVFPSEQEQIEKFEKDHVAQHYFEVLRTLISKKSVFAQQVGLKEVANYLGEIFKRVGAEVEIDESYTAPFVMAHFKSSR PDAKTLIFYNHYDTVPADGDQVWTEDPFTLSVRNGFMYGRGVDDDKGHITARLSALRKYMQHHDDLPVNISFIMEGAEES ASTDLDKYLEKHADKLRGADLLVWEQGTKNALEQLEISGGNYRSDMSAPAILNVIELAKKFYPQGVSVLPTTAGTGPMHT VFDALEVPMVAFGLGNANSRDHGGDENVRIADYYTHIELVEELIRSYE
same superfamily
SSAP: 84.5 OV: 88 SEQ: 19. The match function is unknown. Very similar linkage.
SSAP: 84.5 OV: 88 SEQ: 19. The match function is unknown. Very similar linkage.
SSAP: 84.5 OV: 88 SEQ: 19. The match function is unknown. Very similar linkage.
User 'tronnberg' has allocated a domain to themselves for HomChecking with comment : Grabbed this domain via HomCheck's "Get Me A Domain" button.
User 'tronnberg' has allocated a domain to themselves for HomChecking with comment : Grabbed this domain via HomCheck's "Get Me A Domain" button.
Domain "2pokA01" SCOP scan with no results - no SCOP mapping
Adding scan of type "DOMAIN_SCAN_SCOP_CATH" with 0 results for 2pokA01
Retrieved PRC_PFAMCATH results for job ID SID6546972214933680 and results inserted.
Adding scan of type "DOMAIN_SCAN_PRC_PFAMCATH" with 70 results for 2pokA01
PRC_PFAMCATH job SID6546972214933680 is not yet finished.
The entry "2pokA01" has been submitted to the PRC_PFAMCATH webservice.
The entry "2pokA01" has been submitted to the PRC_PFAMCATH webservice.
Retrieved SSAP results for job ID SID2536503947256938 and results inserted.
Adding scan of type "DOMAIN_SCAN_SSAP_CATH" with 159 results for 2pokA01
SSAP job SID2536503947256938 is not yet finished.
The entry "2pokA01" has been submitted to the SSAP webservice.
The entry "2pokA01" has been submitted to the SSAP webservice.
Retrieved PRC results for job ID SID0524396331398736 and inserted them into the database.
Adding scan of type "DOMAIN_SCAN_PRC_CATH" with 25 results for 2pokA01
PRC job SID0524396331398736 is not yet finished.
The entry "2pokA01" has been submitted to the PRC webservice.
The entry "2pokA01" has been submitted to the PRC webservice.
Retrieved HMM(SAM) results for job ID SID9228267967605680 and inserted them into the database.
Adding scan of type "DOMAIN_SCAN_SAM_CATH" with 18 results for 2pokA01
HMM(SAM) job SID9228267967605680 is not yet finished.
The entry "2pokA01" has been submitted to the HMM (SAM) webservice.
The entry "2pokA01" has been submitted to the HMM (SAM) webservice.
Retrieved "2pokA01" CATHEDRAL results for job ID SID4339951373610952 and inserted them into the database.
Adding scan of type "DOMAIN_SCAN_CATHEDRAL_CATH" with 472 results for 2pokA01
"2pokA01" CATHEDRAL job SID4339951373610952 is not yet finished.
The entry "2pokA01" has been submitted to the CATHEDRAL webservice.
The entry "2pokA01" has been submitted to the CATHEDRAL webservice.
Unable to insert the domain scan results from "2pokA01" CATHEDRAL job SID5889032950335276.
"2pokA01" CATHEDRAL job SID5889032950335276 is not yet finished.
The entry "2pokA01" has been submitted to the CATHEDRAL webservice.
The entry "2pokA01" has been submitted to the CATHEDRAL webservice.
ScanList with 11650 domains written to "/cath/data/current/scanlists/cathdb_current.fletcher/2pokA01.scanlist" for "2pokA01"
Writing ScanList containing 11650 domains to file "/cath/data/current/scanlists/cathdb_current.fletcher/2pokA01.scanlist" for domain "2pokA01"
Waiting for 43 new domains (example : 2z2eB00) to be processed so that they can be scanned against too.
Waiting for 127 new domains (example : 2z2eB00) to be processed so that they can be scanned against too.
Waiting for 206 new domains (example : 2vfzA00) to be processed so that they can be scanned against too.
Waiting for 257 new domains (example : 2rb8A00) to be processed so that they can be scanned against too.
Waiting for 335 new domains (example : 2r5qA00) to be processed so that they can be scanned against too.
Waiting for 410 new domains (example : 2qluA01) to be processed so that they can be scanned against too.
Waiting for 486 new domains (example : 2o2cB01) to be processed so that they can be scanned against too.
Waiting for 559 new domains (example : 2ihuB03) to be processed so that they can be scanned against too.
Waiting for 634 new domains (example : 2e2gJ02) to be processed so that they can be scanned against too.
Waiting for 665 new domains (example : 1vspE00) to be processed so that they can be scanned against too.
Waiting for 642 new domains (example : 1vspE00) to be processed so that they can be scanned against too.
Waiting for 633 new domains (example : 1vspE00) to be processed so that they can be scanned against too.
Waiting for 582 new domains (example : 1vspE00) to be processed so that they can be scanned against too.
Waiting for 555 new domains (example : 1vspE00) to be processed so that they can be scanned against too.
Waiting for 492 new domains (example : 1vspE00) to be processed so that they can be scanned against too.
Waiting for 574 new domains (example : 1vspE00) to be processed so that they can be scanned against too.
Waiting for 624 new domains (example : 1vspE00) to be processed so that they can be scanned against too.
Waiting for 698 new domains (example : 1vspE00) to be processed so that they can be scanned against too.
Waiting for 787 new domains (example : 1vspE00) to be processed so that they can be scanned against too.
Waiting for 869 new domains (example : 1vspE00) to be processed so that they can be scanned against too.
Waiting for 942 new domains (example : 1vspE00) to be processed so that they can be scanned against too.
Waiting for 1001 new domains (example : 1vspE00) to be processed so that they can be scanned against too.
Waiting for 1059 new domains (example : 1vspE00) to be processed so that they can be scanned against too.
Waiting for 1133 new domains (example : 1vspE00) to be processed so that they can be scanned against too.
Waiting for 1234 new domains (example : 1vspE00) to be processed so that they can be scanned against too.
Waiting for 1324 new domains (example : 1vspE00) to be processed so that they can be scanned against too.
Waiting for 1411 new domains (example : 1vspE00) to be processed so that they can be scanned against too.
Waiting for 1402 new domains (example : 1vspE00) to be processed so that they can be scanned against too.
Waiting for 1512 new domains (example : 2e2gA01) to be processed so that they can be scanned against too.
Moving these domains back to write scan list as we want to avoid any problems caused by the remediation that occurred whilst they were progressing through their scans.
PRC_PFAMCATH job SID0543859676514368 is not yet finished.
The entry "2pokA01" has been submitted to the PRC_PFAMCATH webservice.
The entry "2pokA01" has been submitted to the PRC_PFAMCATH webservice.
Unable to retrieve "2pokA01" PRC_PFAMCATH results for job "SID0874858224888704"
PRC_PFAMCATH job SID0874858224888704 is not yet finished.
The entry "2pokA01" has been submitted to the PRC_PFAMCATH webservice.
The entry "2pokA01" has been submitted to the PRC_PFAMCATH webservice.
Giving up on PRC_PFAMCATH job SID4748740914380352 because submission time of Thu Nov 22 02:33:33 2007 is more than 345600 seconds older than current time (Mon Nov 26 03:17:40 2007).
PRC_PFAMCATH job SID4748740914380352 is not yet finished.
The entry "2pokA01" has been submitted to the PRC_PFAMCATH webservice.
The entry "2pokA01" has been submitted to the PRC_PFAMCATH webservice.
Retrieved SSAP results for job ID SID6139339571203744 and results inserted.
Adding scan of type "DOMAIN_SCAN_SSAP_CATH" with 150 results for 2pokA01
SSAP job SID6139339571203744 is not yet finished.
The entry "2pokA01" has been submitted to the SSAP webservice.
The entry "2pokA01" has been submitted to the SSAP webservice.
Giving up on SSAP job SID0409070619782080 because submission time of Wed Nov 14 06:13:55 2007 is more than 345600 seconds older than current time (Sun Nov 18 06:15:46 2007).
SSAP job SID0409070619782080 is not yet finished.
The entry "2pokA01" has been submitted to the SSAP webservice.
The entry "2pokA01" has been submitted to the SSAP webservice.
Unable to retrieve "2pokA01" SSAP results for job "SID9267013475432904"
SSAP job SID9267013475432904 is not yet finished.
The entry "2pokA01" has been submitted to the SSAP webservice.
The entry "2pokA01" has been submitted to the SSAP webservice.
Unable to retrieve "2pokA01" SSAP results for job "SID0966580622612928"
SSAP job SID0966580622612928 is not yet finished.
The entry "2pokA01" has been submitted to the SSAP webservice.
The entry "2pokA01" has been submitted to the SSAP webservice.
Giving up on SSAP job SID9501807863039360 because submission time of Sun Sep 9 22:44:01 2007 is more than 345600 seconds older than current time (Sat Sep 15 07:40:42 2007).
SSAP job SID9501807863039360 is not yet finished.
The entry "2pokA01" has been submitted to the SSAP webservice.
The entry "2pokA01" has been submitted to the SSAP webservice.
Giving up on SSAP job SID2431494771532378 because submission time of Wed Sep 5 18:53:50 2007 is more than 345600 seconds older than current time (Sun Sep 9 20:14:57 2007).
SSAP job SID2431494771532378 is not yet finished.
The entry "2pokA01" has been submitted to the SSAP webservice.
The entry "2pokA01" has been submitted to the SSAP webservice.
Retrieved PRC results for job ID SID8931066365761456 and inserted them into the database.
Adding scan of type "DOMAIN_SCAN_PRC_CATH" with 24 results for 2pokA01
The entry "2pokA01" has been submitted to the PRC webservice.
The entry "2pokA01" has been submitted to the PRC webservice.
Retrieved HMM(SAM) results for job ID SID3637373741925832 and inserted them into the database.
Adding scan of type "DOMAIN_SCAN_SAM_CATH" with 16 results for 2pokA01
The entry "2pokA01" has been submitted to the HMM (SAM) webservice.
The entry "2pokA01" has been submitted to the HMM (SAM) webservice.
Retrieved "2pokA01" CATHEDRAL results for job ID SID4195030290197184 and inserted them into the database.
Adding scan of type "DOMAIN_SCAN_CATHEDRAL_CATH" with 470 results for 2pokA01
The entry "2pokA01" has been submitted to the CATHEDRAL webservice.
The entry "2pokA01" has been submitted to the CATHEDRAL webservice.
ScanList with 11099 domains written to "/cath/data/current/scanlists/cathdb_current.fletcher/2pokA01.scanlist" for "2pokA01"
Writing ScanList containing 11099 domains to file "/cath/data/current/scanlists/cathdb_current.fletcher/2pokA01.scanlist" for domain "2pokA01"
Waiting for 18 new domains (example : 2qg4C01) to be processed so that they can be scanned against too.
Waiting for 73 new domains (example : 2q3eK03) to be processed so that they can be scanned against too.
Waiting for 140 new domains (example : 2q08A02) to be processed so that they can be scanned against too.
Waiting for 188 new domains (example : 2o3jA01) to be processed so that they can be scanned against too.
Waiting for 279 new domains (example : 2b43C04) to be processed so that they can be scanned against too.
Waiting for 351 new domains (example : 1sh0B02) to be processed so that they can be scanned against too.
Waiting for 431 new domains (example : 1r0kA03) to be processed so that they can be scanned against too.
Waiting for 551 new domains (example : 1bplB01) to be processed so that they can be scanned against too.
Waiting for 607 new domains (example : 1bplB01) to be processed so that they can be scanned against too.
Waiting for 686 new domains (example : 1bplB01) to be processed so that they can be scanned against too.
Waiting for 771 new domains (example : 1bplB01) to be processed so that they can be scanned against too.
Waiting for 841 new domains (example : 1bplB01) to be processed so that they can be scanned against too.
Waiting for 903 new domains (example : 1bplB01) to be processed so that they can be scanned against too.
Waiting for 969 new domains (example : 1bplB01) to be processed so that they can be scanned against too.
Waiting for 1085 new domains (example : 1bplB01) to be processed so that they can be scanned against too.
Waiting for 1046 new domains (example : 1bo5O01) to be processed so that they can be scanned against too.
Waiting for 1038 new domains (example : 1bo5O01) to be processed so that they can be scanned against too.
Waiting for 1087 new domains (example : 1bo5O01) to be processed so that they can be scanned against too.
Waiting for 1146 new domains (example : 1bo5O01) to be processed so that they can be scanned against too.
Waiting for 1197 new domains (example : 1bo5O01) to be processed so that they can be scanned against too.
Waiting for 1257 new domains (example : 1bo5O01) to be processed so that they can be scanned against too.
Waiting for 1140 new domains (example : 1ii8B01) to be processed so that they can be scanned against too.
Waiting for 1202 new domains (example : 1ii8B01) to be processed so that they can be scanned against too.
Waiting for 1261 new domains (example : 1ii8B01) to be processed so that they can be scanned against too.
Waiting for 1343 new domains (example : 1ii8B01) to be processed so that they can be scanned against too.
No satisfactory AssignClose result found.
No in_process hits for Domain "2pokA01" ready to be processed
NW result present for Domain "2pokA01"
All required files are present for Domain "2pokA01"
Beginning processing for Domain "2pokA01"
nice chopping