CATH Domain: 2pmqA02 XML data for domain: 2pmqA02

Molscript image for 2pmqA02
2pmqA02
PDB coordinates for domain 2pmqA02

PDB 2pmq, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.20 Alpha-Beta Barrel
3.20.20 TIM Barrel
3.20.20.120 Enolase superfamily Gene3D
3.20.20.120.11
3.20.20.120.11.1
3.20.20.120.11.1.1
3.20.20.120.11.1.1.1
3.20.20.120.11.1.1.1.1

Segment boundaries for domain 2pmqA02

Chopping figure for domain 2pmqA02
DomainStart PDB ResidueStop PDB Residue
2pmqA01 2 116
2pmqA01 351 364
2pmqA02 117 350

Structural Neighbourhood (27 entries)

There are 27 matching structural neighberhood comparisons for CATH ID 3.20.20.120.11.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 27 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2qddA02 87.14 Mandelate racemase/muconate lactonizing enzyme, putativeRoseovarius nubinhibens ISM 3.20.20.120 236 23 94 1.77 1.88
2qdeA02 85.92 Aromatoleum aromaticum EbN1Mandelate racemase/muconate lactonizing enzyme family protein 3.20.20.120 239 24 90 2.01 2.22
1tkkA02 85.54 Bacillus subtilisL-Ala-D/L-Glu epimerase 3.20.20.120 244 21 90 2.15 2.36
2qvhA02 85.04 Ubiquinone and other terpenoid-quinone biosynthesisThermobifida fusca YXO-succinylbenzoate-CoA synthaseO-succinylbenzoate synthase [EC:4.2.1.113]Metabolic pathways 3.20.20.120 224 18 94 2.98 3.15
2oqhA02 84.87 Putative isomeraseStreptomyces coelicolor 3.20.20.120 240 23 90 2.11 2.34
2chrA02 84.62 Ralstonia eutropha JMP134Chloromuconate cycloisomeraseToluene and xylene degradationMuconate cycloisomerase [EC:5.5.1.1]Benzoate degradation via hydroxylation 3.20.20.120 202 18 84 2.20 2.59
2pgwA02 84.60 Sinorhizobium melilotiToluene and xylene degradationBenzoate degradation via hydroxylationMuconate cycloisomerase [EC:5.5.1.1]Mandelate racemase/muconate lactonizing enzyme family protein 3.20.20.120 215 21 91 2.40 2.61
3cb3A02 84.43 Toluene and xylene degradationPolaromonas sp. JS666Mandelate racemase [EC:5.1.2.2]Mandelate racemase/muconate lactonizing enzymeBenzoate degradation via hydroxylation 3.20.20.120 233 19 91 2.87 3.14
2oqyA02 83.87 Muconate cycloisomeraseOceanobacillus iheyensis 3.20.20.120 226 13 92 2.79 3.02
1mdlA02 82.90 Mandelate racemasePseudomonas putida 3.20.20.120 230 16 92 2.77 3.01
2ovlA02 82.73 Toluene and xylene degradationStreptomyces coelicolorMandelate racemase [EC:5.1.2.2]Benzoate degradation via hydroxylationPutative racemase 3.20.20.120 223 18 91 2.80 3.06
3bjsA02 82.49 Polaromonas sp. JS666Mandelate racemase/muconate lactonizing enzyme 3.20.20.120 250 20 85 2.43 2.85
2nqlA02 82.31 Agrobacterium tumefaciens str. C58Isomerase/lactonizing enzyme 3.20.20.120 214 14 90 2.54 2.80
1ec7A02 82.28 Ascorbate and aldarate metabolismD-glucarate catabolic processGlucarate dehydratase activityGlucarate dehydrataseGlucarate dehydratase [EC:4.2.1.40] 3.20.20.120 261 18 82 2.18 2.65
1jpdX02 82.17 Racemase and epimerase activity, acting on amino acids and derivativesL-Ala-D/L-Glu epimeraseEscherichia coli K-12 3.20.20.120 207 17 87 2.45 2.79
2qq6A02 82.06 Rubrobacter xylanophilus DSM 9941Mandelate racemase/muconate lactonizing enzyme-like protein 3.20.20.120 262 19 82 2.28 2.77
2oz8A02 81.43 Mesorhizobium lotiMll7089 protein 3.20.20.120 230 17 92 3.29 3.57
3go2A02 81.32 Burkholderia xenovorans LB400Putative uncharacterized protein 3.20.20.120 268 17 81 2.70 3.32
3cyjA02 81.09 Rubrobacter xylanophilus DSM 9941Mandelate racemase/muconate lactonizing enzyme-like proteinToluene and xylene degradationMandelate racemase [EC:5.1.2.2]Benzoate degradation via hydroxylation 3.20.20.120 235 20 89 2.95 3.29
2oztA02 80.93 Ubiquinone and other terpenoid-quinone biosynthesisThermosynechococcus elongatus BP-1O-succinylbenzoate synthase [EC:4.2.1.113]Tlr1174 proteinMetabolic pathways 3.20.20.120 201 17 84 2.82 3.34
2podB02 80.92 Mandelate racemase / muconate lactonizing enzymeBurkholderia pseudomallei 3.20.20.120 251 20 86 2.60 2.99
1yeyB02 80.41 Xanthomonas campestris pv. campestrisRTS beta protein 3.20.20.120 243 17 83 3.00 3.59
1r6wA01 79.51 Ubiquinone and other terpenoid-quinone biosynthesisMetabolic pathwaysMenaquinone biosynthetic processO-succinylbenzoate synthaseHydro-lyase activity 3.20.20.120 198 16 83 2.76 3.31
3cawA02 78.54 Ubiquinone and other terpenoid-quinone biosynthesisO-succinylbenzoate synthase [EC:4.2.1.113]Bdellovibrio bacteriovorusMetabolic pathwaysPutative uncharacterized protein 3.20.20.120 225 12 92 3.66 3.98
1tzzA02 77.26 Bradyrhizobium japonicumBll6730 protein 3.20.20.120 256 16 80 3.63 4.51
2hzgA02 76.84 Rhodobacter sphaeroides 2.4.1Mandelate racemase/muconate lactonizing enzyme/Enolase superfamily 3.20.20.120 248 13 83 3.27 3.92
2otdA01 72.67 Glycerophospholipid metabolismShigella flexneriGlycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]Glycerophosphodiester phosphodiesterase 3.20.20.190 222 5 72 3.50 4.81
Displaying entries 1 to 27 (page 1 of 1)


Domain ATOM Sequence

>pdb|2pmqA02
VPVHELLGGALTDSVSSYYSLGVEPDEAARQALEKQREGYSRLQVKLGARPIEIDIEAIRKVWEAVRGTGIALAADGNRG
WTTRDALRFSRECPDIPFVEQPCNSFEDLEAIRPLCHHALYDEDGTSLNTVITAAATSLVDGFGKVSRIGGLQHRAFRDF
CAARNLPHTCDDAWGGDIVSAACTHIASTVLPRLEGAWLAQPYVAEHYDAENGVRIEGGRIRVPQGPG    

Domain COMBS Sequence

>pdb|2pmqA02
VPVHELLGGALTDSVSSYYSLGVXEPDEAARQALEKQREGYSRLQVKLGARPIEIDIEAIRKVWEAVRGTGIALAADGNR
GWTTRDALRFSRECPDIPFVXEQPCNSFEDLEAIRPLCHHALYXDEDGTSLNTVITAAATSLVDGFGXKVSRIGGLQHXR
AFRDFCAARNLPHTCDDAWGGDIVSAACTHIASTVLPRLXEGAWLAQPYVAEHYDAENGVRIEGGRIRVPQGPG    

Domain History Events (10)

Domain assigned by auto on 03 Apr 2008 16:30

Assigning to "3.20.20.120" based on similarity with "2pmqB02"

Flow stage update by auto on 03 Apr 2008 16:15

No in_process hits for Domain "2pmqA02" ready to be processed

Update comment by auto on 03 Sep 2007 20:10

Domain "2pmqA02" hits Domain "2pmqB02" (97.4358974358974% over 100%) which is currently in process

Update comment by auto on 03 Sep 2007 11:16

Domain "2pmqA02" hits Domain "2pmqB02" (97.4358974358974% over 100%) which is currently in process

Update comment by auto on 01 Sep 2007 14:06

Domain "2pmqA02" hits Domain "2pmqB02" (97.4358974358974% over 100%) which is currently in process

Flow stage update by auto on 01 Sep 2007 14:05

Domain "2pmqA02" hits Domain "2pmqB02" (97.4358974358974% over 100%) which is currently in process

Flow stage update by auto on 01 Sep 2007 14:05

NW result present for Domain "2pmqA02"

Flow stage update by auto on 24 Aug 2007 10:06

All required files are present for Domain "2pmqA02"

Flow stage update by auto on 23 Aug 2007 18:40

Beginning processing for Domain "2pmqA02"

Insertion by auto on 23 Aug 2007 14:12

Final ChopClose added based on similarity with "2pmqB"