CATH Domain: 2pkeA02 XML data for domain: 2pkeA02

Molscript image for 2pkeA02
2pkeA02
PDB coordinates for domain 2pkeA02

PDB 2pke, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.150 DNA polymerase; domain 1
1.10.150.240 Putative phosphatase; domain 2 Gene3D
1.10.150.240.3
1.10.150.240.3.1
1.10.150.240.3.1.1
1.10.150.240.3.1.1.1
1.10.150.240.3.1.1.1.1

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Segment boundaries for domain 2pkeA02

Chopping figure for domain 2pkeA02
DomainStart PDB ResidueStop PDB Residue
2pkeA01 0 26
2pkeA01 110 249
2pkeA02 27 109

Structural Neighbourhood (4 entries)

There are 4 matching structural neighberhood comparisons for CATH ID 1.10.150.240.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 4 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3ddhA02 92.73 Bacteroides thetaiotaomicronPutative haloacid dehalogenase-like family hydrolasePutative hydrolase of the HAD superfamily 1.10.150.240 78 34 93 1.41 1.51
2hszA02 77.55 Phosphoglycolate phosphatase [EC:3.1.3.18]Haemophilus somnus 129PTMetabolic pathwaysGlyoxylate and dicarboxylate metabolismPhosphoglycolate phosphatase 1.10.150.240 72 9 82 4.04 4.89
2fdrA02 76.88 Agrobacterium tumefaciens str. C58Putative uncharacterized protein 1.10.150.240 64 6 78 3.89 4.94
2px6A02 76.53 Insulin signaling pathwayFatty acid biosynthesisFatty acid synthaseProtein bindingMetabolic pathways 1.10.1470.20 73 8 84 3.72 4.43
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Displaying entries 1 to 4 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2pkeA02
EDYYRTAEADFEAILSGYLDQQHLLAVERRNLKIFGYGAKGTLSIETAIELTEARIEARDIQRIVEIGRATLQHP
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2pkeA02
EDYYRTAEADFEAILSGYLDLGDSRXQQHLLAVERRNLKIFGYGAKGXTLSXIETAIELTEARIEARDIQRIVEIGRATL
QHP
BLAST against CATH

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Domain History Events (55)

Classification merge by cuff on 12 Nov 2010 19:13

COMMENT: merge fold and superfamily FINAL: merge: 1.10.164.10 --> 1.10.150.240

Domain assigned by cuff on 15 May 2008 15:23

same superfamily

Domain assignment manual match h by cuff on 15 May 2008 15:21

same fold as match and same function of some of the domains in the superfamily

Domain assignment manual match t by tronnberg on 19 Sep 2007 15:43

SSAP: 77.8 OV: 83 SEQ: 9. Reasonable similar linkage and structure. Functionally different.

Homcheck review by tronnberg on 19 Sep 2007 15:43

SSAP: 77.8 OV: 83 SEQ: 9. Reasonable similar linkage and structure. Functionally different.

Flow stage update by tronnberg on 19 Sep 2007 15:43

SSAP: 77.8 OV: 83 SEQ: 9. Reasonable similar linkage and structure. Functionally different.

Homcheck allotment by tronnberg on 19 Sep 2007 15:40

User 'tronnberg' has allocated a domain to themselves for HomChecking with comment : Grabbed this domain via HomCheck's "Get Me A Domain" button.

Flow stage update by tronnberg on 19 Sep 2007 15:40

User 'tronnberg' has allocated a domain to themselves for HomChecking with comment : Grabbed this domain via HomCheck's "Get Me A Domain" button.

Flow stage update by auto on 15 Sep 2007 21:21

Domain "2pkeA02" SCOP scan with no results - no SCOP mapping

Domain scan scop cath by auto on 15 Sep 2007 21:20

Adding scan of type "DOMAIN_SCAN_SCOP_CATH" with 0 results for 2pkeA02

Flow stage update by auto on 15 Sep 2007 17:45

Retrieved PRC_PFAMCATH results for job ID SID4091261584494834 and results inserted.

Domain scan prc pfamcath by auto on 15 Sep 2007 17:44

Adding scan of type "DOMAIN_SCAN_PRC_PFAMCATH" with 0 results for 2pkeA02

Update comment by auto on 15 Sep 2007 09:29

PRC_PFAMCATH job SID4091261584494834 is not yet finished.

Flow stage update by auto on 15 Sep 2007 08:56

The entry "2pkeA02" has been submitted to the PRC_PFAMCATH webservice.

Prc pfamcath submit by auto on 15 Sep 2007 08:56

The entry "2pkeA02" has been submitted to the PRC_PFAMCATH webservice.

Flow stage update by auto on 15 Sep 2007 06:59

Retrieved SSAP results for job ID SID7872921585405072 and results inserted.

Domain scan ssap cath by auto on 15 Sep 2007 06:56

Adding scan of type "DOMAIN_SCAN_SSAP_CATH" with 2832 results for 2pkeA02

Update comment by auto on 09 Sep 2007 23:21

SSAP job SID7872921585405072 is not yet finished.

Ssap cath submit by auto on 09 Sep 2007 22:41

The entry "2pkeA02" has been submitted to the SSAP webservice.

Flow stage update by auto on 09 Sep 2007 22:41

The entry "2pkeA02" has been submitted to the SSAP webservice.

Flow stage update by auto on 09 Sep 2007 20:12

Giving up on SSAP job SID3803955824336224 because submission time of Wed Sep 5 18:51:09 2007 is more than 345600 seconds older than current time (Sun Sep 9 20:12:33 2007).

Update comment by auto on 05 Sep 2007 19:56

SSAP job SID3803955824336224 is not yet finished.

Flow stage update by auto on 05 Sep 2007 18:51

The entry "2pkeA02" has been submitted to the SSAP webservice.

Ssap cath submit by auto on 05 Sep 2007 18:51

The entry "2pkeA02" has been submitted to the SSAP webservice.

Flow stage update by auto on 05 Sep 2007 12:53

Retrieved PRC results for job ID SID1923559446853872 and inserted them into the database.

Domain scan prc cath by auto on 05 Sep 2007 12:52

Adding scan of type "DOMAIN_SCAN_PRC_CATH" with 1 results for 2pkeA02

Prc cath submit by auto on 05 Sep 2007 04:22

The entry "2pkeA02" has been submitted to the PRC webservice.

Flow stage update by auto on 05 Sep 2007 04:22

The entry "2pkeA02" has been submitted to the PRC webservice.

Flow stage update by auto on 04 Sep 2007 13:00

Retrieved HMM(SAM) results for job ID SID4825197973394608 and inserted them into the database.

Domain scan sam cath by auto on 04 Sep 2007 12:59

Adding scan of type "DOMAIN_SCAN_SAM_CATH" with 1 results for 2pkeA02

Sam cath submit by auto on 04 Sep 2007 10:25

The entry "2pkeA02" has been submitted to the HMM (SAM) webservice.

Flow stage update by auto on 04 Sep 2007 10:25

The entry "2pkeA02" has been submitted to the HMM (SAM) webservice.

Flow stage update by auto on 04 Sep 2007 06:00

Retrieved "2pkeA02" CATHEDRAL results for job ID SID3168233375858592 and inserted them into the database.

Domain scan cathedral cath by auto on 04 Sep 2007 05:59

Adding scan of type "DOMAIN_SCAN_CATHEDRAL_CATH" with 82 results for 2pkeA02

Cathedral cath submit by auto on 03 Sep 2007 14:27

The entry "2pkeA02" has been submitted to the CATHEDRAL webservice.

Flow stage update by auto on 03 Sep 2007 14:27

The entry "2pkeA02" has been submitted to the CATHEDRAL webservice.

Flow stage update by auto on 03 Sep 2007 12:42

ScanList with 11099 domains written to "/cath/data/current/scanlists/cathdb_current.fletcher/2pkeA02.scanlist" for "2pkeA02"

Write scan list by auto on 03 Sep 2007 12:42

Writing ScanList containing 11099 domains to file "/cath/data/current/scanlists/cathdb_current.fletcher/2pkeA02.scanlist" for domain "2pkeA02"

Update comment by auto on 03 Sep 2007 10:11

Waiting for 18 new domains (example : 2qg4C01) to be processed so that they can be scanned against too.

Update comment by auto on 03 Sep 2007 06:32

Waiting for 73 new domains (example : 2q3eK03) to be processed so that they can be scanned against too.

Update comment by auto on 03 Sep 2007 02:37

Waiting for 140 new domains (example : 2q08A02) to be processed so that they can be scanned against too.

Update comment by auto on 02 Sep 2007 22:32

Waiting for 188 new domains (example : 2o3jA01) to be processed so that they can be scanned against too.

Update comment by auto on 02 Sep 2007 18:22

Waiting for 279 new domains (example : 2b43C04) to be processed so that they can be scanned against too.

Update comment by auto on 02 Sep 2007 14:22

Waiting for 351 new domains (example : 1sh0B02) to be processed so that they can be scanned against too.

Update comment by auto on 02 Sep 2007 10:16

Waiting for 431 new domains (example : 1r0kA03) to be processed so that they can be scanned against too.

Update comment by auto on 02 Sep 2007 02:29

Waiting for 551 new domains (example : 1bplB01) to be processed so that they can be scanned against too.

Update comment by auto on 01 Sep 2007 22:13

Waiting for 607 new domains (example : 1bplB01) to be processed so that they can be scanned against too.

Update comment by auto on 01 Sep 2007 18:15

Waiting for 686 new domains (example : 1bplB01) to be processed so that they can be scanned against too.

Update comment by auto on 01 Sep 2007 14:17

Waiting for 771 new domains (example : 1bplB01) to be processed so that they can be scanned against too.

Flow stage update by auto on 01 Sep 2007 14:13

No satisfactory AssignClose result found.

Flow stage update by auto on 01 Sep 2007 14:05

No in_process hits for Domain "2pkeA02" ready to be processed

Flow stage update by auto on 01 Sep 2007 14:05

NW result present for Domain "2pkeA02"

Flow stage update by auto on 24 Aug 2007 10:06

All required files are present for Domain "2pkeA02"

Flow stage update by auto on 23 Aug 2007 18:40

Beginning processing for Domain "2pkeA02"

Insertion by cuff on 23 Aug 2007 12:58

nice chopping