CATH Domain: 2piaA01 XML data for domain: 2piaA01

Molscript image for 2piaA01
2piaA01
PDB coordinates for domain 2piaA01

PDB 2pia, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.30 Elongation Factor Tu (Ef-tu); domain 3
2.40.30.10 Translation factors Gene3D
2.40.30.10.14
2.40.30.10.14.1
2.40.30.10.14.1.1
2.40.30.10.14.1.1.1
2.40.30.10.14.1.1.1.1

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Segment boundaries for domain 2piaA01

Chopping figure for domain 2piaA01
DomainStart PDB ResidueStop PDB Residue
2piaA01 1 104
2piaA02 105 225
2piaA03 226 321

Structural Neighbourhood (11 entries)

There are 11 matching structural neighberhood comparisons for CATH ID 2.40.30.10.14.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 11 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1ep3B01 86.29 Lactococcus lactis subsp. cremoris MG1363Dihydroorotate dehydrogenase electron transfer subunitProtein bindingDihydroorotate dehydrogenase electron transfer subunit 2.40.30.10 99 20 92 3.08 3.34
2gpjA01 85.25 Siderophore-interacting proteinShewanella putrefaciens CN-32 2.40.30.10 98 14 91 2.67 2.92
1qfjA01 85.11 Porphyrin and chlorophyll metabolismAquacobalamin reductase / NAD(P)H-flavin reductase [EC:1.16.1.3 1.5.1.29]NAD(P)H-flavin reductaseEscherichia coli K-12 2.40.30.10 91 18 84 2.58 3.05
1kzlA02 82.54 NucleusCytosolSchizosaccharomyces pombeMetabolic pathwaysRiboflavin metabolism 2.40.30.20 101 8 83 2.90 3.47
1i8dA01 81.84 Riboflavin metabolismMetabolic pathwaysRiboflavin synthase activityRiboflavin synthase alpha chain [EC:2.5.1.9]Riboflavin synthase alpha chain 2.40.30.20 89 13 83 3.54 4.23
2r6hA01 81.71 Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:1.6.5.-]Porphyromonas gingivalisNADH:ubiquinone oxidoreductase, Na translocating, F subunit 2.40.30.10 138 19 67 1.97 2.92
2rc5B01 80.73 Leptospira interrogansFerredoxin--NADP reductase 2.40.30.10 140 19 70 3.30 4.67
1i8dC02 78.17 Riboflavin metabolismMetabolic pathwaysRiboflavin synthase activityRiboflavin synthase alpha chain [EC:2.5.1.9]Riboflavin synthase alpha chain 2.40.30.20 88 4 74 3.06 4.13
2ck3D01 76.64 ATP catabolic processParkinson's diseaseOxidative phosphorylationAlzheimer's diseaseMetabolic pathways 2.40.10.170 73 10 68 2.99 4.38
1mrzB02 75.44 Riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]Riboflavin metabolismThermotoga maritimaRiboflavin kinase/FMN adenylyltransferaseMetabolic pathways 2.40.30.30 112 6 67 3.04 4.48
2ey4C00 72.15 Pyrococcus furiosusSmall nucleolar rnp gar1-like proteinRNA-binding protein 2.40.10.230 73 8 68 3.39 4.97
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Displaying entries 1 to 11 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2piaA01
TTPQEDGFLRLKIASKEKIARDIWSFELTDPQGAPLPPFEAGANLTVAVPNGSRRTYSLCNDSQERNRYVIAVKRDSNGR
GGSISFIDDTSEGDAVEVSLPRNE
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2piaA01
TTPQEDGFLRLKIASKEKIARDIWSFELTDPQGAPLPPFEAGANLTVAVPNGSRRTYSLCNDSQERNRYVIAVKRDSNGR
GGSISFIDDTSEGDAVEVSLPRNE
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "2pia001" to "2piaA01" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 18:29

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:29

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:55

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"