CATH Domain: 2phcB01 XML data for domain: 2phcB01

Molscript image for 2phcB01
2phcB01
PDB coordinates for domain 2phcB01

PDB 2phc, Chain B, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.1360 Gyrase A; domain 2
3.30.1360.40 Gene3D
3.30.1360.40.5
3.30.1360.40.5.1
3.30.1360.40.5.1.1
3.30.1360.40.5.1.1.1
3.30.1360.40.5.1.1.1.1

[top]
Segment boundaries for domain 2phcB01

Chopping figure for domain 2phcB01
DomainStart PDB ResidueStop PDB Residue
2phcB01 2 84
2phcB02 85 217

Structural Neighbourhood (5 entries)

There are 5 matching structural neighberhood comparisons for CATH ID 3.30.1360.40.5.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 5 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1in0A01 81.02 Hypothetical proteinHaemophilus influenzaeUPF0234 protein HI_1034 3.30.70.860 70 10 75 3.59 4.73
2j8sA02 80.68 Hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 familyAcriflavine resistance protein BProtein bindingEscherichia coli K-12 3.30.70.1430 103 4 73 3.56 4.82
2j8sA03 80.24 Hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 familyAcriflavine resistance protein BProtein bindingEscherichia coli K-12 3.30.70.1320 100 7 76 3.64 4.79
3k40A03 79.06 Aromatic-L-amino-acid decarboxylase activityDopamine biosynthetic process from tyrosineAromatic-L-amino-acid decarboxylaseDevelopmental pigmentationSerotonin biosynthetic process from tryptophan 3.90.1150.10 99 7 72 3.26 4.48
1tuaA01 77.70 Aeropyrum pernixPutative uncharacterized protein 3.30.1370.10 84 7 85 3.77 4.40
[1]
Displaying entries 1 to 5 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|2phcB01
IIKPAGDSAFLISFGDEISEEINDRVHSLAKAIEKESPEWLVELVPAYSSLLVIYDPLKASYEEVESYLKRISAREVERI
KGK
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|2phcB01
MIIKPAGDSAFLISFGDEISEEINDRVHSLAKAIEKESPEWLVELVPAYSSLLVIYDPLKASYEEVESYLKRISAREVER
IKGK
BLAST against CATH

[top]
Domain History Events (54)

Domain assigned by cuff on 02 Apr 2008 10:42

same superfamily

Domain assignment manual match h by cuff on 02 Apr 2008 10:40

ample evidence to be placed in same superfamily

Domain assignment manual match t by tronnberg on 19 Sep 2007 14:10

SSAP: 83.7 OV: 77 SEQ: 5. Similar linkage and structure. The query's function is unknown.

Homcheck review by tronnberg on 19 Sep 2007 14:10

SSAP: 83.7 OV: 77 SEQ: 5. Similar linkage and structure. The query's function is unknown.

Flow stage update by tronnberg on 19 Sep 2007 14:10

SSAP: 83.7 OV: 77 SEQ: 5. Similar linkage and structure. The query's function is unknown.

Homcheck allotment by tronnberg on 19 Sep 2007 14:08

User 'tronnberg' has allocated a domain to themselves for HomChecking with comment : Grabbed this domain via HomCheck's "Get Me A Domain" button.

Flow stage update by tronnberg on 19 Sep 2007 14:08

User 'tronnberg' has allocated a domain to themselves for HomChecking with comment : Grabbed this domain via HomCheck's "Get Me A Domain" button.

Flow stage update by auto on 15 Sep 2007 21:06

Domain "2phcB01" SCOP scan with no results - no SCOP mapping

Domain scan scop cath by auto on 15 Sep 2007 21:05

Adding scan of type "DOMAIN_SCAN_SCOP_CATH" with 0 results for 2phcB01

Flow stage update by auto on 15 Sep 2007 17:25

Retrieved PRC_PFAMCATH results for job ID SID2351947081823298 and results inserted.

Domain scan prc pfamcath by auto on 15 Sep 2007 17:23

Adding scan of type "DOMAIN_SCAN_PRC_PFAMCATH" with 1 results for 2phcB01

Update comment by auto on 15 Sep 2007 09:27

PRC_PFAMCATH job SID2351947081823298 is not yet finished.

Prc pfamcath submit by auto on 15 Sep 2007 08:54

The entry "2phcB01" has been submitted to the PRC_PFAMCATH webservice.

Flow stage update by auto on 15 Sep 2007 08:54

The entry "2phcB01" has been submitted to the PRC_PFAMCATH webservice.

Flow stage update by auto on 15 Sep 2007 06:18

Retrieved SSAP results for job ID SID1201382428309416 and results inserted.

Domain scan ssap cath by auto on 15 Sep 2007 06:10

Adding scan of type "DOMAIN_SCAN_SSAP_CATH" with 4798 results for 2phcB01

Update comment by auto on 09 Sep 2007 23:19

SSAP job SID1201382428309416 is not yet finished.

Flow stage update by auto on 09 Sep 2007 22:39

The entry "2phcB01" has been submitted to the SSAP webservice.

Ssap cath submit by auto on 09 Sep 2007 22:39

The entry "2phcB01" has been submitted to the SSAP webservice.

Flow stage update by auto on 09 Sep 2007 20:10

Giving up on SSAP job SID6866156010850024 because submission time of Wed Sep 5 18:49:10 2007 is more than 345600 seconds older than current time (Sun Sep 9 20:10:47 2007).

Update comment by auto on 05 Sep 2007 19:54

SSAP job SID6866156010850024 is not yet finished.

Flow stage update by auto on 05 Sep 2007 18:49

The entry "2phcB01" has been submitted to the SSAP webservice.

Ssap cath submit by auto on 05 Sep 2007 18:49

The entry "2phcB01" has been submitted to the SSAP webservice.

Flow stage update by auto on 05 Sep 2007 12:35

Retrieved PRC results for job ID SID8289898037977504 and inserted them into the database.

Domain scan prc cath by auto on 05 Sep 2007 12:34

Adding scan of type "DOMAIN_SCAN_PRC_CATH" with 1 results for 2phcB01

Prc cath submit by auto on 04 Sep 2007 13:51

The entry "2phcB01" has been submitted to the PRC webservice.

Flow stage update by auto on 04 Sep 2007 13:51

The entry "2phcB01" has been submitted to the PRC webservice.

Flow stage update by auto on 04 Sep 2007 12:42

Retrieved HMM(SAM) results for job ID SID8544964825835488 and inserted them into the database.

Domain scan sam cath by auto on 04 Sep 2007 12:41

Adding scan of type "DOMAIN_SCAN_SAM_CATH" with 1 results for 2phcB01

Sam cath submit by auto on 04 Sep 2007 10:23

The entry "2phcB01" has been submitted to the HMM (SAM) webservice.

Flow stage update by auto on 04 Sep 2007 10:23

The entry "2phcB01" has been submitted to the HMM (SAM) webservice.

Flow stage update by auto on 04 Sep 2007 05:39

Retrieved "2phcB01" CATHEDRAL results for job ID SID3992449550002144 and inserted them into the database.

Domain scan cathedral cath by auto on 04 Sep 2007 05:37

Adding scan of type "DOMAIN_SCAN_CATHEDRAL_CATH" with 211 results for 2phcB01

Flow stage update by auto on 03 Sep 2007 14:25

The entry "2phcB01" has been submitted to the CATHEDRAL webservice.

Cathedral cath submit by auto on 03 Sep 2007 14:25

The entry "2phcB01" has been submitted to the CATHEDRAL webservice.

Flow stage update by auto on 03 Sep 2007 12:40

ScanList with 11099 domains written to "/cath/data/current/scanlists/cathdb_current.fletcher/2phcB01.scanlist" for "2phcB01"

Write scan list by auto on 03 Sep 2007 12:40

Writing ScanList containing 11099 domains to file "/cath/data/current/scanlists/cathdb_current.fletcher/2phcB01.scanlist" for domain "2phcB01"

Update comment by auto on 03 Sep 2007 10:11

Waiting for 18 new domains (example : 2qg4C01) to be processed so that they can be scanned against too.

Update comment by auto on 03 Sep 2007 06:32

Waiting for 73 new domains (example : 2q3eK03) to be processed so that they can be scanned against too.

Update comment by auto on 03 Sep 2007 02:37

Waiting for 140 new domains (example : 2q08A02) to be processed so that they can be scanned against too.

Update comment by auto on 02 Sep 2007 22:32

Waiting for 188 new domains (example : 2o3jA01) to be processed so that they can be scanned against too.

Update comment by auto on 02 Sep 2007 18:22

Waiting for 279 new domains (example : 2b43C04) to be processed so that they can be scanned against too.

Update comment by auto on 02 Sep 2007 14:22

Waiting for 351 new domains (example : 1sh0B02) to be processed so that they can be scanned against too.

Update comment by auto on 02 Sep 2007 10:16

Waiting for 431 new domains (example : 1r0kA03) to be processed so that they can be scanned against too.

Update comment by auto on 02 Sep 2007 02:29

Waiting for 551 new domains (example : 1bplB01) to be processed so that they can be scanned against too.

Update comment by auto on 01 Sep 2007 22:13

Waiting for 607 new domains (example : 1bplB01) to be processed so that they can be scanned against too.

Update comment by auto on 01 Sep 2007 18:15

Waiting for 686 new domains (example : 1bplB01) to be processed so that they can be scanned against too.

Update comment by auto on 01 Sep 2007 14:17

Waiting for 771 new domains (example : 1bplB01) to be processed so that they can be scanned against too.

Flow stage update by auto on 01 Sep 2007 14:12

No satisfactory AssignClose result found.

Flow stage update by auto on 01 Sep 2007 14:05

No in_process hits for Domain "2phcB01" ready to be processed

Flow stage update by auto on 01 Sep 2007 14:05

NW result present for Domain "2phcB01"

Flow stage update by auto on 24 Aug 2007 10:06

All required files are present for Domain "2phcB01"

Flow stage update by auto on 23 Aug 2007 18:40

Beginning processing for Domain "2phcB01"

Insertion by cuff on 23 Aug 2007 12:58

nice chopping