CATH Domain: 2pehA01 XML data for domain: 2pehA01

Molscript image for 2pehA01
2pehA01
PDB coordinates for domain 2pehA01

PDB 2peh, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.70 Alpha-Beta Plaits
3.30.70.330 Gene3D
3.30.70.330.14
3.30.70.330.14.1
3.30.70.330.14.1.1
3.30.70.330.14.1.1.1
3.30.70.330.14.1.1.1.1

[top]
Segment boundaries for domain 2pehA01

Chopping figure for domain 2pehA01
DomainStart PDB ResidueStop PDB Residue
2pehA01 304 388

Structural Neighbourhood (45 entries)

There are 45 matching structural neighberhood comparisons for CATH ID 3.30.70.330.14.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 45 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2do0A01 89.87 Protein domain specific bindingIntegral to plasma membraneParaspecklesAlternative nuclear mRNA splicing, via spliceosomeHeterogeneous nuclear ribonucleoprotein M 3.30.70.330 76 18 90 3.00 3.32
1oiaA00 89.01 U1 small nuclear ribonucleoprotein ASpliceosomeSpliceosomal complexHomo sapiensProtein binding 3.30.70.330 90 13 87 2.18 2.48
1x5uA01 88.88 SpliceosomeSpliceosomal complexHomo sapiensSplicing factor 3B subunit 4Splicing factor 3B subunit 4 3.30.70.330 80 15 93 3.41 3.63
1cvjA01 88.69 Poly(A) RNA bindingTranslation activator activityProtein C-terminus bindingMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 77 11 91 3.61 3.94
1cvjG02 88.10 Poly(A) RNA bindingProtein C-terminus bindingTranslation activator activityMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 88 15 86 3.19 3.69
1jmtA00 87.86 Spliceosomal complexSplicing factor U2AF 35 kDa subunitCajal bodyHomo sapiensProtein binding 3.30.70.330 98 27 83 2.76 3.30
1fxlA01 87.14 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 71 15 84 3.96 4.70
1x5oA01 87.12 RNA processingHomo sapiensProtein bindingRNA-binding motif, single-stranded-interacting protein 1 3.30.70.330 86 14 88 3.30 3.73
1no8A00 87.10 THO complex subunit 4Mus musculusSpliceosomeSingle-stranded DNA bindingRNA binding 3.30.70.330 78 19 86 2.59 2.99
3feyB00 86.40 SpliceosomeMRNA cappingMRNA cap binding complexNuclear cap-binding protein subunit 2Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 3.30.70.330 97 16 76 2.56 3.36
2u2fA00 85.82 Splicing factor U2AF 65 kDa subunitSpliceosomeSpliceosomal complexSplicing factor U2AF 65 kDa subunitEnzyme binding 3.30.70.330 85 13 91 3.97 4.33
1ufwA00 85.32 Phosphatidylinositol signaling systemSynaptojanin-2Phosphatidylinositol-bisphosphatase [EC:3.1.3.36]Homo sapiensInositol phosphate metabolism 3.30.70.330 95 21 78 2.23 2.82
2jwnA01 85.12 CytoplasmPoly(A) RNA bindingXenopus laevisEmbryonic polyadenylate-binding protein 2-B 3.30.70.330 100 15 77 2.70 3.51
2dgsA01 85.02 CytoplasmDAZ-associated protein 1NucleusRNA bindingHomo sapiens 3.30.70.330 89 18 87 4.21 4.80
1sjqA00 84.77 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 88 19 81 2.31 2.82
2errA01 84.56 Fox-1 homolog AProtein C-terminus bindingHomo sapiensTrans-Golgi network 3.30.70.330 83 16 91 3.54 3.87
1sjrA00 83.20 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 108 15 70 2.54 3.61
1hl6C00 83.14 SpliceosomeRNA-binding protein 8AMicrotubule cytoskeleton organizationNucleusDrosophila melanogaster 3.30.70.330 111 16 65 3.16 4.80
1fjeB02 82.64 NucleolinMesocricetus auratus 3.30.70.330 84 18 84 2.57 3.04
1fjeB01 82.15 NucleolinMesocricetus auratus 3.30.70.330 81 17 89 3.07 3.44
2nzcA00 81.69 Thermotoga maritimaPutative uncharacterized protein 3.30.70.1150 77 10 85 4.07 4.76
2u1aA00 80.96 U1 small nuclear ribonucleoprotein ASpliceosomeSpliceosomal complexHomo sapiensProtein binding 3.30.70.330 88 15 81 3.72 4.55
1qm9A02 80.95 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexMRNA processingNucleolus 3.30.70.330 89 16 82 3.97 4.84
2od4B01 80.77 3.30.70.900 81 4 87 3.77 4.29
1sxlA00 79.60 Sex differentiationDrosophila melanogasterProtein complexPoly-pyrimidine tract bindingNegative regulation of translation 3.30.70.330 97 14 79 3.63 4.57
1kohA01 79.19 Nuclear RNA export factor 1Homo sapiensProtein binding 3.30.70.330 97 6 70 2.71 3.87
1cvjH02 79.17 Poly(A) RNA bindingProtein C-terminus bindingMRNA polyadenylationTranslation activator activityPolyadenylate-binding protein 1 3.30.70.330 52 13 50 2.27 4.49
1in0A01 79.13 Hypothetical proteinHaemophilus influenzaeUPF0234 protein HI_1034 3.30.70.860 70 7 83 3.30 3.97
1vq8S00 79.09 Large subunit ribosomal protein L23Ribosome50S ribosomal protein L23PHaloarcula marismortui 3.30.70.330 81 4 71 3.36 4.73
1qm9A01 79.01 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 98 15 75 3.40 4.50
1eayD00 78.70 Bacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Escherichia coli K-12Chemotaxis protein cheA 3.30.70.400 69 8 80 3.64 4.51
1whvA00 77.94 Mus musculusPoly(A)-specific ribonuclease PARN 3.30.70.330 100 9 65 2.55 3.92
1zzkA00 76.77 SpliceosomeHeterogeneous nuclear ribonucleoprotein KRNA bindingHeterogeneous nuclear ribonucleoprotein KProtein binding 3.30.1370.10 80 7 78 3.82 4.88
1b7yB06 76.75 Aminoacyl-tRNA biosynthesisPhenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]Phenylalanyl-tRNA synthetase beta chainThermus thermophilus 3.30.70.380 86 14 84 3.64 4.29
1vr6A01 76.58 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysThermotoga maritima3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]Phospho-2-dehydro-3-deoxyheptonate aldolase 3.30.70.1140 75 6 80 3.94 4.88
1i1gA02 76.45 Pyrococcus furiosusHTH-type transcriptional regulator lrpALrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA 3.30.70.920 77 10 80 3.70 4.58
2rhsD06 76.41 Aminoacyl-tRNA biosynthesisStaphylococcus haemolyticus JCSC1435Phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]Phenylalanyl-tRNA synthetase beta chain 3.30.70.380 88 14 85 3.57 4.19
2w25A02 76.25 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory proteinLeucine-responsive regulatory proteinMycobacterium tuberculosis 3.30.70.920 81 7 80 3.45 4.27
1utaA00 76.20 Membrane fractionCell cycle cytokinesisCell division protein FtsNCell division protein ftsNProtein binding 3.30.70.1070 77 6 83 3.86 4.64
1rwuA00 76.09 Hypothetical proteinUPF0250 protein ybeDEscherichia coli K-12 3.30.70.1460 87 3 83 3.89 4.64
1l2mA00 75.92 Tomato yellow leaf curl Sardinia virusReplication-associated protein 3.40.1310.20 118 8 63 2.97 4.67
1nzaA00 75.42 Thermus thermophilus HB8Divalent-cation tolerance protein cutAPeriplasmic divalent cation tolerance protein 3.30.70.830 103 10 73 3.55 4.81
1kr4A00 75.21 Thermotoga maritimaDivalent-cation tolerance protein cutAPeriplasmic divalent cation tolerance protein 3.30.70.830 107 7 71 3.47 4.89
3c19A01 75.11 Methanopyrus kandleriUncharacterized conserved protein 3.30.70.1380 98 10 77 3.81 4.91
1ft8A01 72.31 Nuclear RNA export factor 1Homo sapiensProtein binding 3.30.70.330 55 9 56 2.19 3.87
[1]
Displaying entries 1 to 45 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|2pehA01
TKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVK
ACFYN
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|2pehA01
TKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVK
ACFYN
BLAST against CATH

[top]
Domain History Events (8)

Domain assigned by auto on 15 Aug 2007 01:10

Assigning to "3.30.70.330" based on similarity with "2pe8A01"

Flow stage update by auto on 15 Aug 2007 00:11

No in_process hits for Domain "2pehA01" ready to be processed

Update comment by auto on 14 Aug 2007 22:52

Domain "2pehA01" hits Domain "2pehB01" (100% over 100%) which is currently in process

Flow stage update by auto on 04 Aug 2007 14:43

Domain "2pehA01" hits Domain "2pe8A01" (100% over 100%) which is currently in process

Flow stage update by auto on 04 Aug 2007 14:43

NW result present for Domain "2pehA01"

Flow stage update by auto on 16 Jul 2007 22:39

All required files are present for Domain "2pehA01"

Flow stage update by auto on 14 Jul 2007 12:51

Beginning processing for Domain "2pehA01"

Insertion by auto on 14 Jul 2007 10:57

Final ChopClose added based on similarity with "2pe8A"