CATH Domain: 2pc1A00 XML data for domain: 2pc1A00

Molscript image for 2pc1A00
2pc1A00
PDB coordinates for domain 2pc1A00

PDB 2pc1, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.630 Aminopeptidase
3.40.630.30 Gene3D
3.40.630.30.3
3.40.630.30.3.1
3.40.630.30.3.1.1
3.40.630.30.3.1.1.1
3.40.630.30.3.1.1.1.1

Segment boundaries for domain 2pc1A00

Chopping figure for domain 2pc1A00
DomainStart PDB ResidueStop PDB Residue
2pc1A00 -5 167

Structural Neighbourhood (31 entries)

There are 31 matching structural neighberhood comparisons for CATH ID 3.40.630.30.3.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 31 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2fiaA00 87.34 Acetyltransferase, GNAT familyEnterococcus faecalis 3.40.630.30 157 19 89 2.81 3.15
3blnA00 84.16 Bacillus cereus ATCC 10987Putative uncharacterized protein 3.40.630.30 139 17 83 2.91 3.48
3fncA00 82.70 Listeria innocuaLin0611 protein 3.40.630.30 157 13 89 3.05 3.39
1mk4A00 82.47 Bacillus subtilisUncharacterized protein yqjY 3.40.630.30 157 12 84 2.86 3.40
3d3sA00 81.66 L-2,4-diaminobutyric acid acetyltransferaseGlycine, serine and threonine metabolismBordetella parapertussisL-2,4-diaminobutyric acid acetyltransferase [EC:2.3.1.178]Metabolic pathways 3.40.630.30 157 10 82 3.20 3.86
3eo4A00 81.59 Methanocaldococcus jannaschiiUncharacterized protein MJ1062 3.40.630.30 155 11 87 3.44 3.91
2q7bA00 81.57 Acetyltransferase, GNAT familyStreptococcus agalactiae serogroup V 3.40.630.30 161 12 85 3.27 3.84
3fbuA00 81.56 Bacillus anthracisAcetyltransferase, GNAT family 3.40.630.30 166 9 86 3.46 3.99
1vhsB00 81.54 Bacillus subtilisPhosphinothricin acetyltransferase [EC:2.3.1.183]Phosphonate and phosphinate metabolismPutative phosphinothricin acetyltransferase ywnH 3.40.630.30 155 12 86 3.88 4.47
2r7hB00 81.47 Desulfovibrio desulfuricans subsp. desulfuricans str. G20Putative uncharacterized protein 3.40.630.30 157 10 84 2.92 3.44
2ge3B00 81.44 Agrobacterium tumefaciens str. C58Probable acetyltransferase 3.40.630.30 159 12 88 4.13 4.66
1gheA00 81.32 Tyrosine metabolismLimonene and pinene degradationAcetyltransferase1- and 2-Methylnaphthalene degradationPhenylalanine metabolism 3.40.630.30 166 13 83 3.72 4.47
3exnA00 81.01 Tyrosine metabolismLimonene and pinene degradation1- and 2-Methylnaphthalene degradationPhenylalanine metabolismBenzoate degradation via CoA ligation 3.40.630.30 151 11 86 3.79 4.40
2fckA00 80.47 Vibrio choleraeRibosomal-protein-serine acetyltransferase, putative 3.40.630.30 171 12 77 2.82 3.65
2fiwA00 80.35 Putative acetyltransferase [EC:2.3.1.-]GCN5-related N-acetyltransferase:Aminotransferase, class-IIRhodopseudomonas palustris 3.40.630.30 156 8 84 3.81 4.53
2oh1C00 80.03 Listeria monocytogenes serotype 4b str. F2365Acetyltransferase, GNAT family 3.40.630.30 166 19 85 3.85 4.50
1tiqB00 79.86 Bacillus subtilisProtease synthase and sporulation negative regulatory protein PAI 1 3.40.630.30 161 17 84 3.66 4.33
3efaA00 79.83 Tyrosine metabolismBenzoate degradation via CoA ligationLactobacillus plantarumAcetyltransferase (Putative)Limonene and pinene degradation 3.40.630.30 141 12 80 2.93 3.65
2fsrA00 79.83 Agrobacterium tumefaciens str. C58Acetyltranferase 3.40.630.30 168 10 82 3.29 3.98
3d8pB00 79.70 Staphylococcus aureus subsp. aureus Mu50Putative uncharacterized protein 3.40.630.30 157 10 84 3.07 3.62
3f5bA00 79.63 Aminoglycoside N(6')acetyltransferaseLegionella pneumophila subsp. pneumophila str. Philadelphia 1 3.40.630.30 163 10 88 4.25 4.81
1yreC00 79.46 Pseudomonas aeruginosaPutative uncharacterized protein 3.40.630.30 182 11 78 3.54 4.54
2qecA00 79.34 Corynebacterium glutamicumGCN5-related N-acetyltransferase 3.40.630.30 175 14 77 3.17 4.11
2ozgA01 79.29 Anabaena variabilis ATCC 29413GCN5-related N-acetyltransferase 3.40.630.30 117 18 69 2.76 3.96
1qstA00 79.23 HAT A1Tetrahymena thermophila 3.40.630.30 160 4 82 3.53 4.28
1q2yA00 79.00 Bacillus subtilisUncharacterized N-acetyltransferase yjcF 3.40.630.30 140 11 79 3.16 3.96
2fl4A02 78.90 Arginine and proline metabolismSpermine/spermidine acetyltransferase, putativeDiamine N-acetyltransferase [EC:2.3.1.57]Metabolic pathwaysEnterococcus faecalis 3.40.630.30 104 11 60 1.94 3.23
2qmlA00 78.61 BH2621 proteinBacillus halodurans 3.40.630.30 184 14 79 3.39 4.24
2pr1A00 78.15 Uncharacterized N-acetyltransferase ylbPBacillus subtilis 3.40.630.30 152 7 81 3.33 4.11
2pdoA01 77.57 Shigella flexneriAcetyltransferase ypeA 3.40.630.30 118 20 69 2.89 4.15
1xebA00 77.18 Pseudomonas aeruginosaElaA proteinPutative uncharacterized protein 3.40.630.30 146 13 81 3.64 4.49
Displaying entries 1 to 31 (page 1 of 1)


Domain ATOM Sequence

>pdb|2pc1A00
NLYFQGQIRLAFPNEIDQILLIEEARAEIAKTGSDQWQKEDGYPNRNDIIDDILNGYAWVGIEDGLATYAAVIDGHEEVY
DAIYEGKWLHDNHRYLTFHRIAISNQFRGRGLAQTFLQGLIEGHKGPDFRCDTHEKNVTQHILNKLGYQYCGKVPLDGVR
LAYQKIKEK    

Domain COMBS Sequence

>pdb|2pc1A00
XGSDKIHHHHHHENLYFQGXQIRLAFPNEIDQIXLLIEEARAEIAKTGSDQWQKEDGYPNRNDIIDDILNGYAWVGIEDG
XLATYAAVIDGHEEVYDAIYEGKWLHDNHRYLTFHRIAISNQFRGRGLAQTFLQGLIEGHKGPDFRCDTHEKNVTXQHIL
NKLGYQYCGKVPLDGVRLAYQKIKEKGETSIYREIDERNPX    

Domain History Events (58)

Domain assigned by cuff on 02 Apr 2008 11:14

same superfamily

Domain assignment manual match h by tronnberg on 19 Sep 2007 11:17

SSAP: 81.3 OV: 83 SEQ: 13. Similar linkage and structure (only differ with one alfa helix). Share the same function as acetyltransferase.

Homcheck review by tronnberg on 19 Sep 2007 11:17

SSAP: 81.3 OV: 83 SEQ: 13. Similar linkage and structure (only differ with one alfa helix). Share the same function as acetyltransferase.

Flow stage update by tronnberg on 19 Sep 2007 11:17

SSAP: 81.3 OV: 83 SEQ: 13. Similar linkage and structure (only differ with one alfa helix). Share the same function as acetyltransferase.

Homcheck allotment by tronnberg on 19 Sep 2007 11:13

User 'tronnberg' has allocated a domain to themselves for HomChecking with comment : Grabbed this domain via HomCheck's "Get Me A Domain" button.

Flow stage update by tronnberg on 19 Sep 2007 11:13

User 'tronnberg' has allocated a domain to themselves for HomChecking with comment : Grabbed this domain via HomCheck's "Get Me A Domain" button.

Flow stage update by auto on 15 Sep 2007 20:39

Domain "2pc1A00" SCOP scan with no results - no SCOP mapping

Domain scan scop cath by auto on 15 Sep 2007 20:38

Adding scan of type "DOMAIN_SCAN_SCOP_CATH" with 0 results for 2pc1A00

Flow stage update by auto on 15 Sep 2007 16:55

Retrieved PRC_PFAMCATH results for job ID SID4527585996531648 and results inserted.

Domain scan prc pfamcath by auto on 15 Sep 2007 16:53

Adding scan of type "DOMAIN_SCAN_PRC_PFAMCATH" with 208 results for 2pc1A00

Update comment by auto on 15 Sep 2007 09:24

PRC_PFAMCATH job SID4527585996531648 is not yet finished.

Prc pfamcath submit by auto on 15 Sep 2007 08:50

The entry "2pc1A00" has been submitted to the PRC_PFAMCATH webservice.

Flow stage update by auto on 15 Sep 2007 08:50

The entry "2pc1A00" has been submitted to the PRC_PFAMCATH webservice.

Flow stage update by auto on 15 Sep 2007 02:24

Retrieved SSAP results for job ID SID2479474847264896 and results inserted.

Domain scan ssap cath by auto on 15 Sep 2007 02:23

Adding scan of type "DOMAIN_SCAN_SSAP_CATH" with 414 results for 2pc1A00

Update comment by auto on 09 Sep 2007 23:16

SSAP job SID2479474847264896 is not yet finished.

Ssap cath submit by auto on 09 Sep 2007 22:36

The entry "2pc1A00" has been submitted to the SSAP webservice.

Flow stage update by auto on 09 Sep 2007 22:36

The entry "2pc1A00" has been submitted to the SSAP webservice.

Flow stage update by auto on 09 Sep 2007 20:07

Giving up on SSAP job SID8856498620965408 because submission time of Wed Sep 5 16:33:42 2007 is more than 345600 seconds older than current time (Sun Sep 9 20:07:58 2007).

Update comment by auto on 05 Sep 2007 19:52

SSAP job SID8856498620965408 is not yet finished.

Ssap cath submit by auto on 05 Sep 2007 16:33

The entry "2pc1A00" has been submitted to the SSAP webservice.

Flow stage update by auto on 05 Sep 2007 16:33

The entry "2pc1A00" has been submitted to the SSAP webservice.

Flow stage update by auto on 05 Sep 2007 12:02

Retrieved PRC results for job ID SID5239809559926630 and inserted them into the database.

Domain scan prc cath by auto on 05 Sep 2007 12:01

Adding scan of type "DOMAIN_SCAN_PRC_CATH" with 64 results for 2pc1A00

Prc cath submit by auto on 05 Sep 2007 04:17

The entry "2pc1A00" has been submitted to the PRC webservice.

Flow stage update by auto on 05 Sep 2007 04:17

The entry "2pc1A00" has been submitted to the PRC webservice.

Flow stage update by auto on 05 Sep 2007 00:29

Retrieved HMM(SAM) results for job ID SID5571354704147968 and inserted them into the database.

Domain scan sam cath by auto on 05 Sep 2007 00:28

Adding scan of type "DOMAIN_SCAN_SAM_CATH" with 14 results for 2pc1A00

Update comment by auto on 04 Sep 2007 12:38

HMM(SAM) job SID5571354704147968 is not yet finished.

Sam cath submit by auto on 04 Sep 2007 10:19

The entry "2pc1A00" has been submitted to the HMM (SAM) webservice.

Flow stage update by auto on 04 Sep 2007 10:19

The entry "2pc1A00" has been submitted to the HMM (SAM) webservice.

Flow stage update by auto on 04 Sep 2007 05:05

Retrieved "2pc1A00" CATHEDRAL results for job ID SID8158995625933680 and inserted them into the database.

Domain scan cathedral cath by auto on 04 Sep 2007 05:04

Adding scan of type "DOMAIN_SCAN_CATHEDRAL_CATH" with 31 results for 2pc1A00

Cathedral cath submit by auto on 03 Sep 2007 14:22

The entry "2pc1A00" has been submitted to the CATHEDRAL webservice.

Flow stage update by auto on 03 Sep 2007 14:22

The entry "2pc1A00" has been submitted to the CATHEDRAL webservice.

Flow stage update by auto on 03 Sep 2007 12:35

ScanList with 11099 domains written to "/cath/data/current/scanlists/cathdb_current.fletcher/2pc1A00.scanlist" for "2pc1A00"

Write scan list by auto on 03 Sep 2007 12:34

Writing ScanList containing 11099 domains to file "/cath/data/current/scanlists/cathdb_current.fletcher/2pc1A00.scanlist" for domain "2pc1A00"

Update comment by auto on 03 Sep 2007 10:11

Waiting for 18 new domains (example : 2qg4C01) to be processed so that they can be scanned against too.

Update comment by auto on 03 Sep 2007 06:31

Waiting for 73 new domains (example : 2q3eK03) to be processed so that they can be scanned against too.

Update comment by auto on 03 Sep 2007 02:37

Waiting for 140 new domains (example : 2q08A02) to be processed so that they can be scanned against too.

Update comment by auto on 02 Sep 2007 22:32

Waiting for 188 new domains (example : 2o3jA01) to be processed so that they can be scanned against too.

Update comment by auto on 02 Sep 2007 18:22

Waiting for 279 new domains (example : 2b43C04) to be processed so that they can be scanned against too.

Update comment by auto on 02 Sep 2007 14:22

Waiting for 351 new domains (example : 1sh0B02) to be processed so that they can be scanned against too.

Update comment by auto on 02 Sep 2007 10:15

Waiting for 431 new domains (example : 1r0kA03) to be processed so that they can be scanned against too.

Update comment by auto on 02 Sep 2007 02:28

Waiting for 551 new domains (example : 1bplB01) to be processed so that they can be scanned against too.

Update comment by auto on 01 Sep 2007 22:12

Waiting for 607 new domains (example : 1bplB01) to be processed so that they can be scanned against too.

Update comment by auto on 01 Sep 2007 18:15

Waiting for 686 new domains (example : 1bplB01) to be processed so that they can be scanned against too.

Update comment by auto on 01 Sep 2007 14:17

Waiting for 771 new domains (example : 1bplB01) to be processed so that they can be scanned against too.

Update comment by auto on 01 Sep 2007 11:42

Waiting for 841 new domains (example : 1bplB01) to be processed so that they can be scanned against too.

Update comment by auto on 01 Sep 2007 06:16

Waiting for 903 new domains (example : 1bplB01) to be processed so that they can be scanned against too.

Update comment by auto on 01 Sep 2007 03:33

Waiting for 969 new domains (example : 1bplB01) to be processed so that they can be scanned against too.

Update comment by auto on 31 Aug 2007 20:07

Waiting for 1085 new domains (example : 1bplB01) to be processed so that they can be scanned against too.

Flow stage update by auto on 31 Aug 2007 20:02

No satisfactory AssignClose result found.

Flow stage update by auto on 31 Aug 2007 19:48

No in_process hits for Domain "2pc1A00" ready to be processed

Flow stage update by auto on 31 Aug 2007 19:48

NW result present for Domain "2pc1A00"

Flow stage update by auto on 24 Aug 2007 10:06

All required files are present for Domain "2pc1A00"

Flow stage update by auto on 23 Aug 2007 18:40

Beginning processing for Domain "2pc1A00"

Insertion by cuff on 23 Aug 2007 12:58

nice chopping