Domain assigned by cuff on 17 Apr 2008 12:02
same superfamily
CATH Domain: 2pbzA03
2pbzA03
PDB 2pbz, Chain A, Domain 3
Segment boundaries for domain 2pbzA03
| Domain | Start PDB Residue | Stop PDB Residue |
|---|---|---|
| 2pbzA01 | 4 | 85 |
| 2pbzA02 | 86 | 113 |
| 2pbzA02 | 168 | 312 |
| 2pbzA03 | 114 | 167 |
Structural Neighbourhood (1 entries)
There are 1 matching structural neighberhood comparisons for CATH ID 3.30.1490.20.17.1.1.1.1 (SIMAX score < 5)
[1]
Displaying entries 1 to 1 (page 1 of 1)
| Match Depth | Match | SSAP score | Match Keywords | Match Superfamily | Length | Sequence Id | Overlap | RMSD | SIMAX |
|---|---|---|---|---|---|---|---|---|---|
 |
3l4jA02 | 74.83 | 3.30.1490.30 | 47 | 7 | 55 | 2.57 | 4.65 |
[1]
Displaying entries 1 to 1 (page 1 of 1)
Domain History Events (71)
Domain assignment manual match h by cuff on 17 Apr 2008 11:56
same superfamily in scop. nice structural match - query just rather badly resolved
Domain assignment manual match t by tronnberg on 19 Sep 2007 11:12
SSAP: 75.1 OV: 73 SEQ: 7. Reasonable similar linkage and structure. Functionally different.
Homcheck review by tronnberg on 19 Sep 2007 11:12
SSAP: 75.1 OV: 73 SEQ: 7. Reasonable similar linkage and structure. Functionally different.
Flow stage update by tronnberg on 19 Sep 2007 11:12
SSAP: 75.1 OV: 73 SEQ: 7. Reasonable similar linkage and structure. Functionally different.
Homcheck allotment by tronnberg on 19 Sep 2007 11:09
User 'tronnberg' has allocated a domain to themselves for HomChecking with comment : Grabbed this domain via HomCheck's "Get Me A Domain" button.
Flow stage update by tronnberg on 19 Sep 2007 11:09
User 'tronnberg' has allocated a domain to themselves for HomChecking with comment : Grabbed this domain via HomCheck's "Get Me A Domain" button.
Flow stage update by auto on 15 Sep 2007 20:38
Domain "2pbzA03" SCOP scan with no results - no SCOP mapping
Domain scan scop cath by auto on 15 Sep 2007 20:37
Adding scan of type "DOMAIN_SCAN_SCOP_CATH" with 0 results for 2pbzA03
Flow stage update by auto on 15 Sep 2007 16:53
Retrieved PRC_PFAMCATH results for job ID SID5917909136169912 and results inserted.
Domain scan prc pfamcath by auto on 15 Sep 2007 16:52
Adding scan of type "DOMAIN_SCAN_PRC_PFAMCATH" with 0 results for 2pbzA03
Update comment by auto on 15 Sep 2007 09:24
PRC_PFAMCATH job SID5917909136169912 is not yet finished.
Flow stage update by auto on 15 Sep 2007 08:50
The entry "2pbzA03" has been submitted to the PRC_PFAMCATH webservice.
Prc pfamcath submit by auto on 15 Sep 2007 08:50
The entry "2pbzA03" has been submitted to the PRC_PFAMCATH webservice.
Flow stage update by auto on 15 Sep 2007 02:23
Retrieved SSAP results for job ID SID0260478359431656 and results inserted.
Domain scan ssap cath by auto on 15 Sep 2007 02:21
Adding scan of type "DOMAIN_SCAN_SSAP_CATH" with 720 results for 2pbzA03
Update comment by auto on 09 Sep 2007 23:16
SSAP job SID0260478359431656 is not yet finished.
Ssap cath submit by auto on 09 Sep 2007 22:36
The entry "2pbzA03" has been submitted to the SSAP webservice.
Flow stage update by auto on 09 Sep 2007 22:36
The entry "2pbzA03" has been submitted to the SSAP webservice.
Flow stage update by auto on 09 Sep 2007 20:07
Giving up on SSAP job SID1934741635923040 because submission time of Wed Sep 5 16:33:33 2007 is more than 345600 seconds older than current time (Sun Sep 9 20:07:51 2007).
Update comment by auto on 05 Sep 2007 19:51
SSAP job SID1934741635923040 is not yet finished.
Ssap cath submit by auto on 05 Sep 2007 16:33
The entry "2pbzA03" has been submitted to the SSAP webservice.
Flow stage update by auto on 05 Sep 2007 16:33
The entry "2pbzA03" has been submitted to the SSAP webservice.
Flow stage update by auto on 05 Sep 2007 12:01
Retrieved PRC results for job ID SID4756771119580039 and inserted them into the database.
Domain scan prc cath by auto on 05 Sep 2007 12:00
Adding scan of type "DOMAIN_SCAN_PRC_CATH" with 1 results for 2pbzA03
Prc cath submit by auto on 05 Sep 2007 04:17
The entry "2pbzA03" has been submitted to the PRC webservice.
Flow stage update by auto on 05 Sep 2007 04:17
The entry "2pbzA03" has been submitted to the PRC webservice.
Flow stage update by auto on 05 Sep 2007 00:28
Retrieved HMM(SAM) results for job ID SID4863880795835840 and inserted them into the database.
Domain scan sam cath by auto on 05 Sep 2007 00:27
Adding scan of type "DOMAIN_SCAN_SAM_CATH" with 1 results for 2pbzA03
Update comment by auto on 04 Sep 2007 12:37
HMM(SAM) job SID4863880795835840 is not yet finished.
Sam cath submit by auto on 04 Sep 2007 10:19
The entry "2pbzA03" has been submitted to the HMM (SAM) webservice.
Flow stage update by auto on 04 Sep 2007 10:19
The entry "2pbzA03" has been submitted to the HMM (SAM) webservice.
Flow stage update by auto on 04 Sep 2007 05:04
Retrieved "2pbzA03" CATHEDRAL results for job ID SID6986843506217568 and inserted them into the database.
Domain scan cathedral cath by auto on 04 Sep 2007 05:03
Adding scan of type "DOMAIN_SCAN_CATHEDRAL_CATH" with 50 results for 2pbzA03
Cathedral cath submit by auto on 03 Sep 2007 14:21
The entry "2pbzA03" has been submitted to the CATHEDRAL webservice.
Flow stage update by auto on 03 Sep 2007 14:21
The entry "2pbzA03" has been submitted to the CATHEDRAL webservice.
Flow stage update by auto on 03 Sep 2007 12:34
ScanList with 11099 domains written to "/cath/data/current/scanlists/cathdb_current.fletcher/2pbzA03.scanlist" for "2pbzA03"
Write scan list by auto on 03 Sep 2007 12:34
Writing ScanList containing 11099 domains to file "/cath/data/current/scanlists/cathdb_current.fletcher/2pbzA03.scanlist" for domain "2pbzA03"
Update comment by auto on 03 Sep 2007 10:11
Waiting for 18 new domains (example : 2qg4C01) to be processed so that they can be scanned against too.
Update comment by auto on 03 Sep 2007 06:31
Waiting for 73 new domains (example : 2q3eK03) to be processed so that they can be scanned against too.
Update comment by auto on 03 Sep 2007 02:37
Waiting for 140 new domains (example : 2q08A02) to be processed so that they can be scanned against too.
Update comment by auto on 02 Sep 2007 22:32
Waiting for 188 new domains (example : 2o3jA01) to be processed so that they can be scanned against too.
Update comment by auto on 02 Sep 2007 18:22
Waiting for 279 new domains (example : 2b43C04) to be processed so that they can be scanned against too.
Update comment by auto on 02 Sep 2007 14:22
Waiting for 351 new domains (example : 1sh0B02) to be processed so that they can be scanned against too.
Update comment by auto on 02 Sep 2007 10:15
Waiting for 431 new domains (example : 1r0kA03) to be processed so that they can be scanned against too.
Update comment by auto on 02 Sep 2007 02:28
Waiting for 551 new domains (example : 1bplB01) to be processed so that they can be scanned against too.
Update comment by auto on 01 Sep 2007 22:12
Waiting for 607 new domains (example : 1bplB01) to be processed so that they can be scanned against too.
Update comment by auto on 01 Sep 2007 18:15
Waiting for 686 new domains (example : 1bplB01) to be processed so that they can be scanned against too.
Update comment by auto on 01 Sep 2007 14:17
Waiting for 771 new domains (example : 1bplB01) to be processed so that they can be scanned against too.
Update comment by auto on 01 Sep 2007 11:42
Waiting for 841 new domains (example : 1bplB01) to be processed so that they can be scanned against too.
Update comment by auto on 01 Sep 2007 06:16
Waiting for 903 new domains (example : 1bplB01) to be processed so that they can be scanned against too.
Update comment by auto on 01 Sep 2007 03:33
Waiting for 969 new domains (example : 1bplB01) to be processed so that they can be scanned against too.
Update comment by auto on 31 Aug 2007 20:07
Waiting for 1085 new domains (example : 1bplB01) to be processed so that they can be scanned against too.
Update comment by auto on 30 Aug 2007 16:17
Waiting for 1046 new domains (example : 1bo5O01) to be processed so that they can be scanned against too.
Update comment by auto on 30 Aug 2007 10:12
Waiting for 1038 new domains (example : 1bo5O01) to be processed so that they can be scanned against too.
Update comment by auto on 30 Aug 2007 06:32
Waiting for 1087 new domains (example : 1bo5O01) to be processed so that they can be scanned against too.
Update comment by auto on 30 Aug 2007 02:37
Waiting for 1146 new domains (example : 1bo5O01) to be processed so that they can be scanned against too.
Update comment by auto on 29 Aug 2007 22:16
Waiting for 1197 new domains (example : 1bo5O01) to be processed so that they can be scanned against too.
Update comment by auto on 29 Aug 2007 14:43
Waiting for 1257 new domains (example : 1bo5O01) to be processed so that they can be scanned against too.
Update comment by auto on 29 Aug 2007 09:05
Waiting for 1140 new domains (example : 1ii8B01) to be processed so that they can be scanned against too.
Update comment by auto on 29 Aug 2007 02:24
Waiting for 1202 new domains (example : 1ii8B01) to be processed so that they can be scanned against too.
Update comment by auto on 28 Aug 2007 22:29
Waiting for 1261 new domains (example : 1ii8B01) to be processed so that they can be scanned against too.
Update comment by auto on 28 Aug 2007 18:34
Waiting for 1343 new domains (example : 1ii8B01) to be processed so that they can be scanned against too.
Update comment by auto on 28 Aug 2007 14:50
Waiting for 1412 new domains (example : 1ii8B01) to be processed so that they can be scanned against too.
Update comment by auto on 28 Aug 2007 10:15
Waiting for 1494 new domains (example : 1ii8B01) to be processed so that they can be scanned against too.
Flow stage update by auto on 28 Aug 2007 10:12
No satisfactory AssignClose result found.
Flow stage update by auto on 28 Aug 2007 10:04
No in_process hits for Domain "2pbzA03" ready to be processed
Flow stage update by auto on 28 Aug 2007 10:04
NW result present for Domain "2pbzA03"
Flow stage update by auto on 21 Aug 2007 10:06
All required files are present for Domain "2pbzA03"
Flow stage update by auto on 20 Aug 2007 17:33
Beginning processing for Domain "2pbzA03"
Insertion by cuff on 20 Aug 2007 10:47
nice chopping
