CATH Domain: 2pbiB00 XML data for domain: 2pbiB00

Molscript image for 2pbiB00
2pbiB00
PDB coordinates for domain 2pbiB00

PDB 2pbi, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.130 7 Propellor
2.130.10 Methylamine Dehydrogenase; Chain H
2.130.10.10 YVTN repeat-like/Quinoprotein amine dehydrogenase Gene3D
2.130.10.10.6
2.130.10.10.6.1
2.130.10.10.6.1.1
2.130.10.10.6.1.1.1
2.130.10.10.6.1.1.1.1

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Segment boundaries for domain 2pbiB00

Chopping figure for domain 2pbiB00
DomainStart PDB ResidueStop PDB Residue
2pbiB00 9 353

Structural Neighbourhood (7 entries)

There are 7 matching structural neighberhood comparisons for CATH ID 2.130.10.10.6.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 7 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1p22A02 83.28 Signal transductionProtein bindingUbiquitin-dependent protein catabolic processNIK-I-kappaB/NF-kappaB cascadeF-box/WD repeat-containing protein 1A 2.130.10.10 295 21 81 2.06 2.53
1nr0A01 82.13 Caenorhabditis elegansOvipositionLocomotionMuscle thin filament assemblyNematode larval development 2.130.10.10 298 14 83 2.26 2.71
1nr0A02 81.76 Caenorhabditis elegansMuscle thin filament assemblyOvipositionLocomotionRegulation of locomotion 2.130.10.10 312 15 83 2.68 3.23
1l0qA01 80.95 Methanosarcina mazeiORF492 2.130.10.10 295 11 76 2.16 2.83
1pguB01 78.58 Response to osmotic stressNucleusCell growth / morphogenesisBudding, cell polarity and filament formationActin binding 2.130.10.10 279 12 78 2.48 3.15
1jofA00 75.01 Neurospora crassaCarboxy-cis,cis-muconate cyclase 2.130.10.10 355 7 74 3.49 4.66
1sqjB01 74.07 Oligoxyloglucan reducing end-specific cellobiohydrolaseGeotrichum sp. M128 2.130.10.140 322 8 82 4.05 4.89
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Displaying entries 1 to 7 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2pbiB00
NETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVI
VWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQI
LTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYY
PSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRV
STLRVSPDGTAFCSGSWDHTLRVWA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2pbiB00
GMATDGLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIV
SSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSAC
SFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHE
SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVS
ILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 23 Feb 2008 23:27

Assigning to "2.130.10.10" based on similarity with "2bcjB00"

Flow stage update by auto on 23 Feb 2008 23:12

No in_process hits for Domain "2pbiB00" ready to be processed

Flow stage update by auto on 23 Feb 2008 23:11

NW result present for Domain "2pbiB00"

Flow stage update by auto on 23 Feb 2008 12:17

All required files are present for Domain "2pbiB00"

Flow stage update by auto on 22 Feb 2008 21:20

Beginning processing for Domain "2pbiB00"

Insertion by auto on 22 Feb 2008 17:56

Final ChopClose added based on similarity with "2bcjB"