CATH Domain: 2p3eB02 XML data for domain: 2p3eB02

Molscript image for 2p3eB02
2p3eB02
PDB coordinates for domain 2p3eB02

PDB 2p3e, Chain B, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.20 Alpha-Beta Barrel
3.20.20 TIM Barrel
3.20.20.10 Alanine racemase Gene3D
3.20.20.10.7
3.20.20.10.7.1
3.20.20.10.7.1.1
3.20.20.10.7.1.1.1
3.20.20.10.7.1.1.1.2

Segment boundaries for domain 2p3eB02

Chopping figure for domain 2p3eB02
DomainStart PDB ResidueStop PDB Residue
2p3eB01 2 40
2p3eB01 282 420
2p3eB02 41 281

Structural Neighbourhood (13 entries)

There are 13 matching structural neighberhood comparisons for CATH ID 3.20.20.10.7.1.1.1.2 (SIMAX score < 5)

Displaying entries 1 to 13 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2o0tA02 87.00 Lysine biosynthesisMetabolic pathwaysDiaminopimelate decarboxylase [EC:4.1.1.20]Diaminopimelate decarboxylaseMycobacterium tuberculosis 3.20.20.10 260 32 85 1.86 2.18
1knwA02 84.92 Lysine biosynthesisMetabolic pathwaysDiaminopimelate decarboxylase [EC:4.1.1.20]Diaminopimelate decarboxylaseProtein binding 3.20.20.10 244 26 86 1.83 2.13
1w8gA00 81.39 UPF0001 protein yggSEscherichia coli K-12 3.20.20.10 226 10 88 3.00 3.41
1ct5A00 80.28 UPF0001 protein YBL036CIdentical protein bindingPyridoxal phosphate bindingSaccharomyces cerevisiae 3.20.20.10 225 11 84 3.38 3.98
1tqjC00 74.90 Ribulose-phosphate 3-epimerasePentose phosphate pathwayPentose and glucuronate interconversionsCarbon fixation in photosynthetic organismsRibulose-phosphate 3-epimerase [EC:5.1.3.1] 3.20.20.70 218 11 77 3.43 4.45
1wbhB00 74.82 Arginine and proline metabolismGlyoxylate and dicarboxylate metabolismMetabolic pathwaysPentose and glucuronate interconversionsPentose phosphate pathway 3.20.20.70 214 8 81 3.88 4.75
2fliC00 74.64 Pentose phosphate pathwayPentose and glucuronate interconversionsMetabolic pathwaysRibulose-phosphate 3-epimerase [EC:5.1.3.1]Streptococcus pyogenes serotype M1 3.20.20.70 219 9 76 3.44 4.51
3ctlA00 73.75 [EC:5.1.3.-]D-allulose-6-phosphate 3-epimeraseAllulose 6-phosphate 3-epimerase activityProtein bindingEscherichia coli K-12 3.20.20.70 219 7 78 3.87 4.96
1wa3D00 73.65 Thermotoga maritimaArginine and proline metabolism2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.16]Glyoxylate and dicarboxylate metabolism 3.20.20.70 203 11 76 3.55 4.63
1o1zA00 73.27 Thermotoga maritimaGlycerophospholipid metabolismGlycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]Putative uncharacterized protein 3.20.20.190 226 6 73 3.38 4.63
1q6oB00 72.74 Ascorbate and aldarate metabolism3-keto-L-gulonate-6-phosphate decarboxylase ulaDMagnesium ion binding3-dehydro-L-gulonate-6-phosphate decarboxylase [EC:4.1.1.85]3-dehydro-L-gulonate-6-phosphate decarboxylase activity 3.20.20.70 215 9 75 3.67 4.87
2nqlA02 71.95 Agrobacterium tumefaciens str. C58Isomerase/lactonizing enzyme 3.20.20.120 214 7 76 3.78 4.96
1vcvA00 71.05 Pyrobaculum aerophilumProbable deoxyribose-phosphate aldolasePentose phosphate pathwayDeoxyribose-phosphate aldolase [EC:4.1.2.4] 3.20.20.70 226 8 75 3.58 4.76
Displaying entries 1 to 13 (page 1 of 1)


Domain ATOM Sequence

>pdb|2p3eB02
SNFIKERFEAYRKAFPDALICYAVKANFNPHLVKLLGELGAGADIVSGGELYLAKKAGIPPERIVYAGVGKTEKELTDAV
DSEILMFNVESRQELDVLNEIAGKLGKKARIAIRVNPSKFGVDIREAQKEYEYASKLENLEIVGIHCHIGSQILDISPYR
EAVEKVVSLYESLTQKGFDIKYLDIGGGLGIKYKPEDKEPAPQDLADLLKDLLENVKAKIILEPG    

Domain COMBS Sequence

>pdb|2p3eB02
SNFIKERFEAYRKAFPDALICYAVKANFNPHLVKLLGELGAGADIVSGGELYLAKKAGIPPERIVYAGVGKTEKELTDAV
DSEILMFNVESRQELDVLNEIAGKLGKKARIAIRVNPDVDPKTHPYIATGMQKSKFGVDIREAQKEYEYASKLENLEIVG
IHCHIGSQILDISPYREAVEKVVSLYESLTQKGFDIKYLDIGGGLGIKYKPEDKEPAPQDLADLLKDLLENVKAKIILEP
G    

Domain History Events (6)

Domain assigned by auto on 31 Aug 2007 20:02

Assigning to "3.20.20.10" based on similarity with "1twiA02"

Flow stage update by auto on 31 Aug 2007 19:48

No in_process hits for Domain "2p3eB02" ready to be processed

Flow stage update by auto on 31 Aug 2007 19:48

NW result present for Domain "2p3eB02"

Flow stage update by auto on 24 Aug 2007 10:06

All required files are present for Domain "2p3eB02"

Flow stage update by auto on 23 Aug 2007 18:40

Beginning processing for Domain "2p3eB02"

Insertion by cuff on 23 Aug 2007 12:19

nice chopping