CATH Domain: 2p39A00 XML data for domain: 2p39A00

Molscript image for 2p39A00
2p39A00
PDB coordinates for domain 2p39A00

PDB 2p39, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.80 Trefoil
2.80.10 Trefoil (Acidic Fibroblast Growth Factor, subunit A)
2.80.10.50 Gene3D
2.80.10.50.3
2.80.10.50.3.1
2.80.10.50.3.1.1
2.80.10.50.3.1.1.1
2.80.10.50.3.1.1.1.1

Segment boundaries for domain 2p39A00

Chopping figure for domain 2p39A00
DomainStart PDB ResidueStop PDB Residue
2p39A00 29 170

Structural Neighbourhood (17 entries)

There are 17 matching structural neighberhood comparisons for CATH ID 2.80.10.50.3.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 17 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1pwaA00 88.92 Negative regulation of bile acid biosynthetic processNervous system developmentPositive regulation of glucose importPathways in cancerPositive regulation of cell proliferation 2.80.10.50 123 34 85 2.88 3.38
1q1uA00 86.52 Pathways in cancerMAPK signaling pathwayMelanomaRegulation of actin cytoskeletonFibroblast growth factor 12 2.80.10.50 138 24 88 4.29 4.83
1dfcA03 83.98 FascinActin cytoskeletonActin filament bundle assemblyHomo sapiensCell proliferation 2.80.10.50 123 13 82 2.87 3.48
1n4kA01 83.27 MicrosomeVoluntary musculoskeletal movementNucleolusPhosphoinositide bindingSarcoplasmic reticulum 2.80.10.50 141 9 79 2.62 3.29
1jlxA02 83.22 Amaranthus caudatusAgglutinin 2.80.10.50 140 7 84 3.20 3.79
1upsA02 83.16 Clostridium perfringensGlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase 2.80.10.50 133 11 85 2.74 3.22
1ybiA02 82.83 HA-33Clostridium botulinum 2.80.10.50 141 7 84 2.48 2.93
1dfcA02 82.01 FascinActin cytoskeletonActin filament bundle assemblyHomo sapiensCell proliferation 2.80.10.50 123 8 80 2.69 3.35
1l2hA00 81.63 Prion diseasesPositive regulation of nitric oxide biosynthetic processType I diabetes mellitusPositive regulation of T cell proliferationAlzheimer's disease 2.80.10.50 144 8 81 3.50 4.27
1vclA02 81.04 Cucumaria echinataHemolytic lectin CEL-III 2.80.10.50 134 9 83 3.46 4.16
3c9zA02 80.50 Sambucus nigraNigrin b 2.80.10.50 125 7 77 2.32 2.99
1dfcA01 80.48 FascinActin cytoskeletonActin filament bundle assemblyHomo sapiensCell proliferation 2.80.10.50 122 12 81 3.50 4.28
1m2tB02 80.47 Beta-galactoside-specific lectin 1Viscum album 2.80.10.50 124 8 76 2.39 3.11
3c9zA01 80.46 Sambucus nigraNigrin b 2.80.10.50 130 6 78 3.26 4.13
1knmA00 79.66 Streptomyces lividansEndo-1,4-beta-xylanase A 2.80.10.50 129 3 78 2.84 3.63
1dfcA04 79.39 FascinActin cytoskeletonActin filament bundle assemblyHomo sapiensCell proliferation 2.80.10.50 107 10 70 2.38 3.38
1hcdA00 77.62 Membrane fractionPlasma membraneActin filament bindingHisactophilin-1Cytosol 2.80.10.50 118 11 80 3.60 4.45
Displaying entries 1 to 17 (page 1 of 1)


Domain ATOM Sequence

>pdb|2p39A00
SPLLGSSWGGLIHLYTATARNSYHLQIHKNGHVDGAPHQTIYSALMIRSEDAGFVVITGVMSRRYLCMDFRGNIFGSHYF
DPENCRFQHQTLENGYDVYHSPQYHFLVSLGRAKRAFLPGMNPPPYSQFLSRRNEIPLIHFN    

Domain COMBS Sequence

>pdb|2p39A00
YPNASPLLGSSWGGLIHLYTATARNSYHLQIHKNGHVDGAPHQTIYSALMIRSEDAGFVVITGVMSRRYLCMDFRGNIFG
SHYFDPENCRFQHQTLENGYDVYHSPQYHFLVSLGRAKRAFLPGMNPPPYSQFLSRRNEIPLIHFNTPIPRRHTR    

Domain History Events (8)

Domain assigned by auto on 15 Aug 2007 01:08

Assigning to "2.80.10.50" based on similarity with "2p23A00"

Flow stage update by auto on 15 Aug 2007 00:10

No in_process hits for Domain "2p39A00" ready to be processed

Update comment by auto on 14 Aug 2007 22:51

Domain "2p39A00" hits Domain "2p23A00" (35.2941176470588% over 86.4516129032258%) which is currently in process

Flow stage update by auto on 04 Aug 2007 06:37

Domain "2p39A00" hits Domain "2p23B00" (35.2941176470588% over 86.4516129032258%) which is currently in process

Flow stage update by auto on 04 Aug 2007 06:37

NW result present for Domain "2p39A00"

Flow stage update by auto on 16 Jul 2007 22:39

All required files are present for Domain "2p39A00"

Flow stage update by auto on 14 Jul 2007 12:51

Beginning processing for Domain "2p39A00"

Insertion by auto on 14 Jul 2007 10:56

Final ChopClose added based on similarity with "2p23A"