Domain assigned by cuff on 13 May 2008 12:23
same superfamily
CATH Domain: 2oyoA01
2oyoA01
PDB 2oyo, Chain A, Domain 1
Segment boundaries for domain 2oyoA01
| Domain | Start PDB Residue | Stop PDB Residue |
|---|---|---|
| 2oyoA01 | 19 | 70 |
| 2oyoA02 | 71 | 195 |
Structural Neighbourhood (2 entries)
There are 2 matching structural neighberhood comparisons for CATH ID 1.20.5.810.1.1.1.1.1 (SIMAX score < 5)
[1]
Displaying entries 1 to 2 (page 1 of 1)
| Match Depth | Match | SSAP score | Match Keywords | Match Superfamily | Length | Sequence Id | Overlap | RMSD | SIMAX |
|---|---|---|---|---|---|---|---|---|---|
 |
2prrA01 | 90.79 | 1.20.5.810 | 52 | 30 | 98 | 1.43 | 1.46 | |
|
2pfxA01 | 87.20 | 1.20.5.810 | 47 | 31 | 90 | 2.20 | 2.43 |
[1]
Displaying entries 1 to 2 (page 1 of 1)
Domain History Events (59)
Domain assignment manual match h by cuff on 13 May 2008 12:20
same family in scop, excellent structural comparison, nice scores
Domain assignment manual match t by tronnberg on 17 Sep 2007 14:24
SSAP: 79.8 OV: 90 SEQ: 9. Similar linkage and reasonable similar structure. Functionally different. None of the matches on the Scan List (with an assigned CATH code and a SSAP score of 70 or above) has the same function as the query. I think that 2pfxB01 (TBA) should be assigned to the same topologuy as the query (and perhaps also the same H- family).
Homcheck review by tronnberg on 17 Sep 2007 14:24
SSAP: 79.8 OV: 90 SEQ: 9. Similar linkage and reasonable similar structure. Functionally different. None of the matches on the Scan List (with an assigned CATH code and a SSAP score of 70 or above) has the same function as the query. I think that 2pfxB01 (TBA) should be assigned to the same topologuy as the query (and perhaps also the same H- family).
Flow stage update by tronnberg on 17 Sep 2007 14:24
SSAP: 79.8 OV: 90 SEQ: 9. Similar linkage and reasonable similar structure. Functionally different. None of the matches on the Scan List (with an assigned CATH code and a SSAP score of 70 or above) has the same function as the query. I think that 2pfxB01 (TBA) should be assigned to the same topologuy as the query (and perhaps also the same H- family).
Homcheck allotment by tronnberg on 17 Sep 2007 14:14
User 'tronnberg' has allocated a domain to themselves for HomChecking with comment : Grabbed this domain via HomCheck's "Get Me A Domain" button.
Flow stage update by tronnberg on 17 Sep 2007 14:14
User 'tronnberg' has allocated a domain to themselves for HomChecking with comment : Grabbed this domain via HomCheck's "Get Me A Domain" button.
Flow stage update by auto on 15 Sep 2007 19:02
Domain "2oyoA01" SCOP scan with no results - no SCOP mapping
Domain scan scop cath by auto on 15 Sep 2007 19:01
Adding scan of type "DOMAIN_SCAN_SCOP_CATH" with 0 results for 2oyoA01
Flow stage update by auto on 15 Sep 2007 15:09
Retrieved PRC_PFAMCATH results for job ID SID1199985627126037 and results inserted.
Domain scan prc pfamcath by auto on 15 Sep 2007 15:08
Adding scan of type "DOMAIN_SCAN_PRC_PFAMCATH" with 0 results for 2oyoA01
Update comment by auto on 15 Sep 2007 09:15
PRC_PFAMCATH job SID1199985627126037 is not yet finished.
Prc pfamcath submit by auto on 15 Sep 2007 08:37
The entry "2oyoA01" has been submitted to the PRC_PFAMCATH webservice.
Flow stage update by auto on 15 Sep 2007 08:37
The entry "2oyoA01" has been submitted to the PRC_PFAMCATH webservice.
Flow stage update by auto on 12 Sep 2007 10:38
Retrieved SSAP results for job ID SID9846321185189472 and results inserted.
Domain scan ssap cath by auto on 12 Sep 2007 10:36
Adding scan of type "DOMAIN_SCAN_SSAP_CATH" with 2237 results for 2oyoA01
Update comment by auto on 09 Sep 2007 23:08
SSAP job SID9846321185189472 is not yet finished.
Ssap cath submit by auto on 09 Sep 2007 22:25
The entry "2oyoA01" has been submitted to the SSAP webservice.
Flow stage update by auto on 09 Sep 2007 22:25
The entry "2oyoA01" has been submitted to the SSAP webservice.
Flow stage update by auto on 09 Sep 2007 19:58
Giving up on SSAP job SID4111404173106528 because submission time of Wed Sep 5 16:19:25 2007 is more than 345600 seconds older than current time (Sun Sep 9 19:58:24 2007).
Update comment by auto on 05 Sep 2007 19:42
SSAP job SID4111404173106528 is not yet finished.
Ssap cath submit by auto on 05 Sep 2007 16:19
The entry "2oyoA01" has been submitted to the SSAP webservice.
Flow stage update by auto on 05 Sep 2007 16:19
The entry "2oyoA01" has been submitted to the SSAP webservice.
Flow stage update by auto on 05 Sep 2007 10:21
Retrieved PRC results for job ID SID4936754550236624 and inserted them into the database.
Domain scan prc cath by auto on 05 Sep 2007 10:20
Adding scan of type "DOMAIN_SCAN_PRC_CATH" with 6 results for 2oyoA01
Prc cath submit by auto on 05 Sep 2007 03:54
The entry "2oyoA01" has been submitted to the PRC webservice.
Flow stage update by auto on 05 Sep 2007 03:54
The entry "2oyoA01" has been submitted to the PRC webservice.
Flow stage update by auto on 04 Sep 2007 23:08
Retrieved HMM(SAM) results for job ID SID9910631981050368 and inserted them into the database.
Domain scan sam cath by auto on 04 Sep 2007 23:07
Adding scan of type "DOMAIN_SCAN_SAM_CATH" with 4 results for 2oyoA01
Update comment by auto on 04 Sep 2007 12:14
HMM(SAM) job SID9910631981050368 is not yet finished.
Sam cath submit by auto on 04 Sep 2007 10:07
The entry "2oyoA01" has been submitted to the HMM (SAM) webservice.
Flow stage update by auto on 04 Sep 2007 10:07
The entry "2oyoA01" has been submitted to the HMM (SAM) webservice.
Flow stage update by auto on 04 Sep 2007 03:12
Retrieved "2oyoA01" CATHEDRAL results for job ID SID3779754736911488 and inserted them into the database.
Domain scan cathedral cath by auto on 04 Sep 2007 03:11
Adding scan of type "DOMAIN_SCAN_CATHEDRAL_CATH" with 117 results for 2oyoA01
Cathedral cath submit by auto on 03 Sep 2007 14:10
The entry "2oyoA01" has been submitted to the CATHEDRAL webservice.
Flow stage update by auto on 03 Sep 2007 14:10
The entry "2oyoA01" has been submitted to the CATHEDRAL webservice.
Flow stage update by auto on 03 Sep 2007 12:13
ScanList with 11099 domains written to "/cath/data/current/scanlists/cathdb_current.fletcher/2oyoA01.scanlist" for "2oyoA01"
Write scan list by auto on 03 Sep 2007 12:12
Writing ScanList containing 11099 domains to file "/cath/data/current/scanlists/cathdb_current.fletcher/2oyoA01.scanlist" for domain "2oyoA01"
Update comment by auto on 03 Sep 2007 10:11
Waiting for 18 new domains (example : 2qg4C01) to be processed so that they can be scanned against too.
Update comment by auto on 03 Sep 2007 06:31
Waiting for 73 new domains (example : 2q3eK03) to be processed so that they can be scanned against too.
Update comment by auto on 03 Sep 2007 02:36
Waiting for 140 new domains (example : 2q08A02) to be processed so that they can be scanned against too.
Update comment by auto on 02 Sep 2007 22:32
Waiting for 188 new domains (example : 2o3jA01) to be processed so that they can be scanned against too.
Update comment by auto on 02 Sep 2007 18:21
Waiting for 279 new domains (example : 2b43C04) to be processed so that they can be scanned against too.
Update comment by auto on 02 Sep 2007 14:22
Waiting for 351 new domains (example : 1sh0B02) to be processed so that they can be scanned against too.
Update comment by auto on 02 Sep 2007 10:15
Waiting for 431 new domains (example : 1r0kA03) to be processed so that they can be scanned against too.
Update comment by auto on 02 Sep 2007 02:28
Waiting for 551 new domains (example : 1bplB01) to be processed so that they can be scanned against too.
Update comment by auto on 01 Sep 2007 22:12
Waiting for 607 new domains (example : 1bplB01) to be processed so that they can be scanned against too.
Update comment by auto on 01 Sep 2007 18:14
Waiting for 686 new domains (example : 1bplB01) to be processed so that they can be scanned against too.
Update comment by auto on 01 Sep 2007 14:16
Waiting for 771 new domains (example : 1bplB01) to be processed so that they can be scanned against too.
Update comment by auto on 01 Sep 2007 11:41
Waiting for 841 new domains (example : 1bplB01) to be processed so that they can be scanned against too.
Update comment by auto on 01 Sep 2007 06:15
Waiting for 903 new domains (example : 1bplB01) to be processed so that they can be scanned against too.
Update comment by auto on 01 Sep 2007 03:32
Waiting for 969 new domains (example : 1bplB01) to be processed so that they can be scanned against too.
Update comment by auto on 31 Aug 2007 20:06
Waiting for 1085 new domains (example : 1bplB01) to be processed so that they can be scanned against too.
Flow stage update by auto on 31 Aug 2007 20:01
No satisfactory AssignClose result found.
Flow stage update by auto on 31 Aug 2007 19:48
No in_process hits for Domain "2oyoA01" ready to be processed
Flow stage update by auto on 31 Aug 2007 19:48
NW result present for Domain "2oyoA01"
Flow stage update by auto on 24 Aug 2007 10:06
All required files are present for Domain "2oyoA01"
Flow stage update by auto on 23 Aug 2007 18:40
Beginning processing for Domain "2oyoA01"
Insertion by cuff on 23 Aug 2007 12:58
nice chopping
