CATH Domain: 2oxcA00 XML data for domain: 2oxcA00

Molscript image for 2oxcA00
2oxcA00
PDB coordinates for domain 2oxcA00

PDB 2oxc, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.300 P-loop containing nucleotide triphosphate hydrolases Gene3D
3.40.50.300.3
3.40.50.300.3.1
3.40.50.300.3.1.1
3.40.50.300.3.1.1.1
3.40.50.300.3.1.1.1.1

Segment boundaries for domain 2oxcA00

Chopping figure for domain 2oxcA00
DomainStart PDB ResidueStop PDB Residue
2oxcA00 62 266

Structural Neighbourhood (10 entries)

There are 10 matching structural neighberhood comparisons for CATH ID 3.40.50.300.3.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 10 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1vecA00 91.07 RNA degradationATP-dependent RNA helicase DDX6/DHH1 [EC:3.6.1.-]Probable ATP-dependent RNA helicase DDX6Homo sapiensRNA helicase activity 3.40.50.300 206 33 95 1.56 1.64
1q0uB00 89.52 Geobacillus stearothermophilusRNA binding protein 3.40.50.300 202 30 94 2.05 2.17
3fmoB00 88.04 CytoplasmNuclear poreATP-dependent RNA helicase DDX19BRNA bindingHomo sapiens 3.40.50.300 232 34 84 1.71 2.02
2pl3A00 87.77 Homo sapiensProbable ATP-dependent RNA helicase DDX10RNA helicase activity 3.40.50.300 232 30 83 1.49 1.78
1wrbA00 85.88 DjVLGBDugesia japonica 3.40.50.300 232 32 83 2.04 2.45
1rifA02 80.01 ATP-dependent DNA helicase uvsWEnterobacteria phage T4 3.40.50.300 192 14 93 4.11 4.40
2is6A01 79.87 Nucleotide excision repairMismatch repairDNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.1.-]DNA helicase IIProtein binding 3.40.50.300 200 15 77 3.41 4.40
1pjrA01 78.44 Geobacillus stearothermophilusATP-dependent DNA helicase pcrA 3.40.50.300 202 11 76 3.40 4.43
1c4oA01 76.55 Thermus thermophilus HB8Nucleotide excision repairUvrABC system protein BExcinuclease ABC subunit B 3.40.50.300 153 19 69 2.97 4.29
1nktA01 73.04 Protein exportBacterial secretion systemProtein translocase subunit secA 1Preprotein translocase subunit SecAMycobacterium tuberculosis 3.40.50.300 291 14 63 3.05 4.80
Displaying entries 1 to 10 (page 1 of 1)


Domain ATOM Sequence

>pdb|2oxcA00
ADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTRE
IAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGS
FQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL    

Domain COMBS Sequence

>pdb|2oxcA00
ADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTRE
IAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGS
FQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLNS    

Domain History Events (6)

Domain assigned by auto on 12 Dec 2008 20:54

Assigning to "3.40.50.300" based on similarity with "2j0uA01"

Flow stage update by auto on 12 Dec 2008 20:36

No in_process hits for Domain "2oxcA00" ready to be processed

Flow stage update by auto on 12 Dec 2008 20:36

NW result present for Domain "2oxcA00"

Flow stage update by auto on 10 Dec 2008 14:16

All required files are present for Domain "2oxcA00"

Flow stage update by auto on 10 Dec 2008 14:15

Beginning processing for Domain "2oxcA00"

Insertion by cuff on 08 Dec 2008 13:32

WCD