CATH Domain: 2otkE00 XML data for domain: 2otkE00

Molscript image for 2otkE00
2otkE00
PDB coordinates for domain 2otkE00

PDB 2otk, Chain E, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.5 Single alpha-helices involved in coiled-coils or other helix-helix interfaces
1.20.5.420 Immunoglobulin FC, subunit C Gene3D
1.20.5.420.13
1.20.5.420.13.1
1.20.5.420.13.1.1
1.20.5.420.13.1.1.1
1.20.5.420.13.1.1.1.1

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Segment boundaries for domain 2otkE00

Chopping figure for domain 2otkE00
DomainStart PDB ResidueStop PDB Residue
2otkE00 14 56

Structural Neighbourhood (13 entries)

There are 13 matching structural neighberhood comparisons for CATH ID 1.20.5.420.13.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 13 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1t6oA00 84.23 Measles virus strain MoratenPhosphoprotein 1.10.8.10 49 16 81 2.70 3.31
2jdiH02 84.00 F-type H+-transporting ATPase subunit delta [EC:3.6.3.14]Huntington's diseaseOxidative phosphorylationParkinson's diseaseBos taurus 1.20.5.440 42 7 88 4.14 4.68
2e5yA02 80.32 ATP synthase epsilon chainBacillus sp. PS3 1.20.5.440 45 9 77 3.43 4.41
2gm6A01 78.88 Ralstonia eutropha JMP134Cysteine dioxygenase type I 1.20.5.440 38 15 74 2.89 3.88
2aefB02 77.77 Methanothermobacter thermautotrophicus str. Delta HCalcium-gated potassium channel mthK 1.20.5.870 28 3 65 2.54 3.90
2prrA01 76.79 Ralstonia eutropha JMP134Alkylhydroperoxidase AhpD core:Uncharacterised peroxidase-related 1.20.5.810 52 9 67 2.74 4.07
1jekA00 73.49 Visna/maedi virus EV1 KV1772Envelope glycoprotein gp160 1.20.5.440 40 10 41 1.11 2.65
1vf5C03 71.09 Mastigocladus laminosusApocytochrome f 1.20.5.700 32 9 37 0.69 1.85
2p10B02 69.81 Mesorhizobium lotiMll9387 protein 1.20.5.460 26 19 39 1.12 2.83
1s5lX00 69.70 Photosystem II reaction center X proteinThermosynechococcus elongatus BP-1 1.20.5.510 40 5 41 1.77 4.23
3c8vA04 67.78 Desulfovibrio desulfuricans subsp. desulfuricans str. G20Putative uncharacterized protein 1.20.5.510 19 15 37 1.06 2.85
1d66B02 67.29 Regulatory protein GAL4NucleusSequence-specific DNA binding transcription factor activityTranscription activator activityPositive regulation of transcription by galactose 1.20.5.640 15 20 34 0.80 2.29
1mkmA02 64.89 Thermotoga maritimaTranscriptional regulator, IclR family 1.20.5.640 14 0 32 1.12 3.44
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Displaying entries 1 to 13 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2otkE00
GEIVYLPNLNPDQLCAFIHSLHDDPSQSANLLAEAKKLNDAQA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2otkE00
GEIVYLPNLNPDQLCAFIHSLHDDPSQSANLLAEAKKLNDAQAPKVD
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 23 Feb 2008 23:25

Assigning to "1.20.5.420" based on similarity with "1deeG00"

Flow stage update by auto on 23 Feb 2008 23:12

No in_process hits for Domain "2otkE00" ready to be processed

Flow stage update by auto on 23 Feb 2008 23:11

NW result present for Domain "2otkE00"

Flow stage update by auto on 23 Feb 2008 12:17

All required files are present for Domain "2otkE00"

Flow stage update by auto on 22 Feb 2008 21:20

Beginning processing for Domain "2otkE00"

Insertion by auto on 22 Feb 2008 17:51

Final ChopClose added based on similarity with "1deeG"