CATH Domain: 2oogD00

2oogD00

PDB 2oog, Chain D, Domain 0

CATH Code	Level Description	Links
3	Alpha Beta
3.20	Alpha-Beta Barrel
3.20.20	TIM Barrel
3.20.20.190	Phosphatidylinositol (PI) phosphodiesterase	Gene3D
3.20.20.190.8
3.20.20.190.8.1
3.20.20.190.8.1.1
3.20.20.190.8.1.1.1
3.20.20.190.8.1.1.1.1

Structure
Sequence
History

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Segment boundaries for domain 2oogD00

Domain	Start PDB Residue	Stop PDB Residue
2oogD00	44	311

What is a Structural Neighbour?

The term "structural neighbour" is used here to describe two CATH domains that share a degree of structural similarity. The SSAP algorithm is used to calculate this similarity and works by generating a structure-based pairwise alignment of the two domains then scoring this alignment using a RMSD score which has been normalised by the length of the larger domain divided by the number of aligned residues (SIMAX).

Structural Neighbourhood (2 entries)

There are 2 matching structural neighberhood comparisons for CATH ID 3.20.20.190.8.1.1.1.1 (SIMAX score < 5)

Match Depth	Match	SSAP score	Match Keywords	Match Superfamily	Length	Sequence Id	Overlap	RMSD	SIMAX
	2otdA01	85.07	Glycerophospholipid metabolismShigella flexneriGlycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]Glycerophosphodiester phosphodiesterase	3.20.20.190	222	27	82	2.11	2.57
	2o55A00	83.65		3.20.20.190	247	21	85	2.53	2.95

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Domain ATOM Sequence

>pdb|2oogD00
QWHTNLTNERFTTIAHRGASGYAPEHTFQAYDKSHNELKASYIEIDLQRTKDGHLVAMHDETVNRTTNGHGKVEDYTLDE
LKQLDAGSWFNKKYPKYARASYKNAKVPTLDEILERYGPNANYYIETKSPDVYPGMEEQLLASLKKHHLLNNNKLKNGHV
MIQSFSDESLKKIHRQNKHVPLVKLVDKGELQQFNDQRLKEIRSYAIGLGPDYTDLTEQNTHHLKDLGFIVHPYTVNEKA
DMLRLNKYGVDGVFTNFADKYKEVIKEG

BLAST against CATH

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Domain COMBS Sequence

>pdb|2oogD00
EQTNQIANKPQAIQWHTNLTNERFTTIAHRGASGYAPEHTFQAYDKSHNELKASYIEIDLQRTKDGHLVAMHDETVNRTT
NGHGKVEDYTLDELKQLDAGSWFNKKYPKYARASYKNAKVPTLDEILERYGPNANYYIETKSPDVYPGMEEQLLASLKKH
HLLNNNKLKNGHVMIQSFSDESLKKIHRQNKHVPLVKLVDKGELQQFNDQRLKEIRSYAIGLGPDYTDLTEQNTHHLKDL
GFIVHPYTVNEKADMLRLNKYGVDGVFTNFADKYKEVIKEGHHHHHH

BLAST against CATH

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Domain History Events (14)

Domain assigned by auto on 14 Feb 2008 18:13

Assigning to "3.20.20.190" based on similarity with "2oogA00"

Flow stage update by auto on 14 Feb 2008 18:11

No in_process hits for Domain "2oogD00" ready to be processed

Update comment by auto on 14 Feb 2008 17:57

Domain "2oogD00" hits Domain "2oogC00" (100% over 100%) which is currently in process