CATH Domain: 2onsA01 XML data for domain: 2onsA01

Molscript image for 2onsA01
2onsA01
PDB coordinates for domain 2onsA01

PDB 2ons, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.190 D-Maltodextrin-Binding Protein; domain 2
3.40.190.10 Periplasmic binding protein-like II Gene3D
3.40.190.10.10
3.40.190.10.10.1
3.40.190.10.10.1.1
3.40.190.10.10.1.1.1
3.40.190.10.10.1.1.1.1

Segment boundaries for domain 2onsA01

Chopping figure for domain 2onsA01
DomainStart PDB ResidueStop PDB Residue
2onsA01 29 112
2onsA01 284 342
2onsA02 113 283

Structural Neighbourhood (17 entries)

There are 17 matching structural neighberhood comparisons for CATH ID 3.40.190.10.10.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 17 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3gzgA01 87.70 Molybdate transport system substrate-binding proteinMolybdate-binding periplasmic protein; permeaseABC transportersXanthomonas axonopodis pv. citri 3.40.190.10 120 25 82 1.36 1.65
1atgA01 87.41 Azotobacter vinelandiiBinding protein 3.40.190.10 122 18 82 1.61 1.95
3cvgA01 83.86 3.40.190.10 144 16 86 3.31 3.84
1twyA01 83.63 Two-component systemABC transportersVibrio choleraePhosphate transport system substrate-binding proteinABC transporter, periplasmic substrate-binding protein 3.40.190.10 112 20 77 2.46 3.17
1pc3A01 82.71 Two-component systemABC transportersPhosphate-binding protein pstS 1Phosphate transport system substrate-binding proteinMycobacterium tuberculosis 3.40.190.10 141 17 94 4.38 4.64
1p99A01 81.48 ABC transportersLactococcal lipoproteinD-methionine transport system substrate-binding proteinStaphylococcus aureus subsp. aureus Mu50 3.40.190.10 144 11 86 3.46 3.99
1xs5A01 81.36 ABC transportersTreponema pallidumMembrane lipoprotein TpN32D-methionine transport system substrate-binding protein 3.40.190.10 134 7 82 3.02 3.66
3fzvD02 80.83 Probable transcriptional regulatorPseudomonas aeruginosa 3.40.190.10 109 11 71 2.87 4.02
1i6aA01 79.91 LysR family transcriptional regulator, hydrogen peroxide-inducible genes activatorEscherichia coli K-12Hydrogen peroxide-inducible genes activator 3.40.190.10 108 10 74 3.50 4.68
2ql3A01 79.50 Rhodococcus jostii RHA1Probable transcriptional regulator, LysR family protein 3.40.190.10 97 16 67 2.62 3.90
1us5A01 78.87 Glutamate receptorThermus thermophilus 3.40.190.10 157 7 83 3.27 3.92
1uthB01 77.95 LysR-type regulatory proteinBurkholderia sp. DNT 3.40.190.10 127 5 73 3.65 4.97
3fd3A01 77.88 Agrobacterium tumefaciens str. C58LysR family transcriptional regulator, chromosome initiation inhibitorTranscriptional regulator, LysR family 3.40.190.10 104 11 70 2.92 4.13
1ixcA02 76.82 LysR-type regulatory proteinCupriavidus necator 3.40.190.10 99 15 65 2.77 4.21
1lstA01 75.28 ABC transportersLysine-arginine-ornithine-binding periplasmic proteinSalmonella enterica subsp. enterica serovar TyphimuriumLysine/arginine/ornithine transport system substrate-binding protein 3.40.190.10 137 11 78 3.72 4.75
1ii5A01 75.23 Polar amino acid transport system substrate-binding proteinSynechocystis sp. PCC 6803Slr1257 protein 3.40.190.10 128 17 80 3.62 4.50
3cvgC01 70.78 3.40.190.10 81 16 46 1.95 4.16
Displaying entries 1 to 17 (page 1 of 1)


Domain ATOM Sequence

>pdb|2onsA01
GHMNVKLKVFHAGSLTEPMKAFKRAFEEKHPNVEVQTEAAGSAATIRKVTELGRKADVIATADYTLIQKMMYPEFANWTI
MFAKVYGITIPKNAENRELAVEFVKLVISEEGQEILRELGQEPLVPPRADTAVPSLKAMVEVS    

Domain COMBS Sequence

>pdb|2onsA01
GHMNVKLKVFHAGSLTEPMKAFKRAFEEKHPNVEVQTEAAGSAATIRKVTELGRKADVIATADYTLIQKMMYPEFANWTI
MFAKVYGITIPKNAENRELAVEFVKLVISEEGQEILRELGQEPLVPPRADTAVPSLKAMVEVS    

Domain History Events (8)

Domain assigned by auto on 16 Mar 2009 16:43

Assigning to "3.40.190.10" based on similarity with "2onkE01"

Flow stage update by auto on 16 Mar 2009 16:42

No in_process hits for Domain "2onsA01" ready to be processed

Update comment by auto on 12 Dec 2008 20:50

Domain "2onsA01" hits Domain "2onkE01" (100% over 100%) which is currently in process

Flow stage update by auto on 12 Dec 2008 20:36

Domain "2onsA01" hits Domain "2onkE01" (100% over 100%) which is currently in process

Flow stage update by auto on 12 Dec 2008 20:35

NW result present for Domain "2onsA01"

Flow stage update by auto on 10 Dec 2008 14:16

All required files are present for Domain "2onsA01"

Flow stage update by auto on 10 Dec 2008 14:15

Beginning processing for Domain "2onsA01"

Insertion by cuff on 08 Dec 2008 13:36

fine