CATH Domain: 2omzB00 XML data for domain: 2omzB00

Molscript image for 2omzB00
2omzB00
PDB coordinates for domain 2omzB00

PDB 2omz, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.40 Immunoglobulin-like
2.60.40.60 Cadherins Gene3D
2.60.40.60.2
2.60.40.60.2.1
2.60.40.60.2.1.1
2.60.40.60.2.1.1.1
2.60.40.60.2.1.1.1.1

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Segment boundaries for domain 2omzB00

Chopping figure for domain 2omzB00
DomainStart PDB ResidueStop PDB Residue
2omzB00 -3 101

Structural Neighbourhood (10 entries)

There are 10 matching structural neighberhood comparisons for CATH ID 2.60.40.60.2.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 10 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1edhA02 84.73 Calcium ion bindingProtein domain specific bindingRPTP-like protein bindingProtein homooligomerizationMus musculus 2.60.40.60 112 24 91 3.87 4.25
2yqgA00 82.65 Desmoglein 2Arrhythmogenic right ventricular cardiomyopathy (ARVC)Homo sapiensDesmoglein-2 2.60.40.60 123 34 83 3.42 4.08
1l3wA04 82.33 EP-cadherinXenopus laevis 2.60.40.60 106 14 90 3.28 3.62
1l3wA03 81.19 EP-cadherinXenopus laevis 2.60.40.60 114 18 84 3.86 4.58
1f00I02 78.34 Pathogenic Escherichia coli infectionIntiminIntiminProtein bindingEscherichia coli O127:H6 str. E2348/69 2.60.40.1080 89 11 75 3.34 4.45
1m1sA00 76.61 Caenorhabditis elegansSperm-specific protein ZC168.6 2.60.40.360 107 5 82 3.48 4.23
1ze3C01 76.44 Fimbrial chaperone proteinChaperone protein fimCEscherichia coli K-12 2.60.40.360 117 5 76 3.53 4.59
1cwvA02 76.16 InvasinYersinia pseudotuberculosis 2.60.40.920 97 9 73 3.43 4.69
1l3wA05 75.55 EP-cadherinXenopus laevis 2.60.40.60 107 11 83 3.70 4.45
3cmgA04 74.94 Putative beta-galactosidaseBacteroides fragilis NCTC 9343 2.60.40.1560 87 4 69 3.43 4.95
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Displaying entries 1 to 10 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2omzB00
GPLGSWVIPPISCPENEKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTL
FSHAVSSNGNAVEDPMEILITVTDQ
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2omzB00
GPLGSWVIPPISCPENEKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTL
FSHAVSSNGNAVEDPMEILITVTDQ
BLAST against CATH

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Domain History Events (8)

Domain assigned by auto on 27 Nov 2007 10:26

Assigning to "2.60.40.60" based on similarity with "1o6sB00"

Flow stage update by auto on 27 Nov 2007 10:25

No in_process hits for Domain "2omzB00" ready to be processed

Update comment by auto on 27 Nov 2007 06:37

Domain "2omzB00" hits Domain "2omuB00" (100% over 100%) which is currently in process

Flow stage update by auto on 27 Nov 2007 06:23

Domain "2omzB00" hits Domain "2omuB00" (100% over 100%) which is currently in process

Flow stage update by auto on 27 Nov 2007 06:23

NW result present for Domain "2omzB00"

Flow stage update by auto on 24 Nov 2007 14:38

All required files are present for Domain "2omzB00"

Flow stage update by auto on 24 Nov 2007 02:36

Beginning processing for Domain "2omzB00"

Insertion by auto on 23 Nov 2007 19:05

Final ChopClose added based on similarity with "1o6sB"