CATH Domain: 2oikA00

2oikA00

PDB 2oik, Chain A, Domain 0

CATH Code	Level Description	Links
3	Alpha Beta
3.30	2-Layer Sandwich
3.30.428	HIT family, subunit A
3.30.428.10	HIT family, subunit A	Gene3D
3.30.428.10.1
3.30.428.10.1.1
3.30.428.10.1.1.1
3.30.428.10.1.1.1.1
3.30.428.10.1.1.1.1.1

Structure
Sequence
History

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Segment boundaries for domain 2oikA00

Domain	Start PDB Residue	Stop PDB Residue
2oikA00	6	144

What is a Structural Neighbour?

The term "structural neighbour" is used here to describe two CATH domains that share a degree of structural similarity. The SSAP algorithm is used to calculate this similarity and works by generating a structure-based pairwise alignment of the two domains then scoring this alignment using a RMSD score which has been normalised by the length of the larger domain divided by the number of aligned residues (SIMAX).

Structural Neighbourhood (2 entries)

There are 2 matching structural neighberhood comparisons for CATH ID 3.30.428.10.1.1.1.1.1 (SIMAX score < 5)

Match Depth	Match	SSAP score	Match Keywords	Match Superfamily	Length	Sequence Id	Overlap	RMSD	SIMAX
	1y23B01	83.16	Bacillus subtilisProtein hitHit-like protein involved in cell-cycle regulation	3.30.428.10	112	18	72	2.06	2.85
	1kpfA00	78.98	Histidine triad nucleotide-binding protein 1NucleusCytoskeletonHomo sapiensProtein kinase C binding	3.30.428.10	111	15	71	3.02	4.22

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Domain ATOM Sequence

>pdb|2oikA00
SFHKNCELCTTAGGEILWQDALCRVVHVENQDYPGFCRVILNRHVKESDLRPAERDHLLVVFAVEEAVREVRPDKINLAS
LGNTPHVHWHVIPRFKRDRHFPNSVWGETKRESLPQALDQGSTTALKKAISVRLD

BLAST against CATH

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Domain COMBS Sequence

>pdb|2oikA00
GXTRTXSFHKNCELCTTAGGEILWQDALCRVVHVENQDYPGFCRVILNRHVKEXSDLRPAERDHLXLVVFAVEEAVREVX
RPDKINLASLGNXTPHVHWHVIPRFKRDRHFPNSVWGETKRESLPQALDQGSTTALKKAISVRLDQGEPVFXGX

BLAST against CATH

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Domain History Events (12)

Domain assigned by auto on 14 Feb 2008 17:27

Assigning to "3.30.428.10" based on similarity with "2oikD00"