CATH Domain: 2ogiB00

2ogiB00

PDB 2ogi, Chain B, Domain 0

CATH Code	Level Description	Links
1	Mainly Alpha
1.10	Orthogonal Bundle
1.10.3210	Hypothetical protein af1432
1.10.3210.10	Hypothetical protein af1432	Gene3D
1.10.3210.10.4
1.10.3210.10.4.1
1.10.3210.10.4.1.1
1.10.3210.10.4.1.1.1
1.10.3210.10.4.1.1.1.1

Structure
Sequence
History

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Segment boundaries for domain 2ogiB00

Domain	Start PDB Residue	Stop PDB Residue
2ogiB00	2	195

What is a Structural Neighbour?

The term "structural neighbour" is used here to describe two CATH domains that share a degree of structural similarity. The SSAP algorithm is used to calculate this similarity and works by generating a structure-based pairwise alignment of the two domains then scoring this alignment using a RMSD score which has been normalised by the length of the larger domain divided by the number of aligned residues (SIMAX).

Structural Neighbourhood (0 entries)

Sorry, we could not find any non-redundant representatives with similar structural scores to this domain in CATH.

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Domain ATOM Sequence

>pdb|2ogiB00
TYKDYTGLDRTELLSKVRHSDKRFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKELSDDEFLRLIDKYQPDPDLK
KWGNNIWHGLVGIYKIQEDLAIKDQDILAAIAKHTVGSAQSTLDKIVYVADYIEHNRDFPGVEEARELAKVDLNKAVAYE
TARTVAFLASKAQPIYPKTIETYNAYIPYLD

BLAST against CATH

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Domain COMBS Sequence

>pdb|2ogiB00
GXTYKDYTGLDRTELLSKVRHXXSDKRFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKELSDDEFLRLIDKYQPD
PDLKKWGNNIWHGLVGIYKIQEDLAIKDQDILAAIAKHTVGSAQXSTLDKIVYVADYIEHNRDFPGVEEARELAKVDLNK
AVAYETARTVAFLASKAQPIYPKTIETYNAYIPYLD

BLAST against CATH

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Domain History Events (12)

Domain assigned by auto on 17 Oct 2008 15:32

Assigning to "1.10.3210.10" based on similarity with "2o08A00"

Flow stage update by auto on 17 Oct 2008 15:26

No in_process hits for Domain "2ogiB00" ready to be processed

Update comment by auto on 17 Oct 2008 15:09

Domain "2ogiB00" hits Domain "2o08B00" (42.0212765957447% over 95.9183673469388%) which is currently in process