CATH Domain: 2ogaA01 XML data for domain: 2ogaA01

Molscript image for 2ogaA01
2ogaA01
PDB coordinates for domain 2ogaA01

PDB 2oga, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.640 Aspartate Aminotransferase; domain 2
3.40.640.10 Type I PLP-dependent aspartate aminotransferase-like (Major domain) Gene3D
3.40.640.10.10
3.40.640.10.10.2
3.40.640.10.10.2.1
3.40.640.10.10.2.1.1
3.40.640.10.10.2.1.1.1

Segment boundaries for domain 2ogaA01

Chopping figure for domain 2ogaA01
DomainStart PDB ResidueStop PDB Residue
2ogaA01 7 110
2ogaA01 117 252
2ogaA02 253 377

Structural Neighbourhood (29 entries)

There are 29 matching structural neighberhood comparisons for CATH ID 3.40.640.10.10.2.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 29 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1mdoA01 90.82 Amino sugar and nucleotide sugar metabolismUDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferaseTwo-component systemSalmonella enterica subsp. enterica serovar TyphimuriumUDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.-] 3.40.640.10 226 38 95 1.31 1.37
1o69A01 90.25 Campylobacter jejuniAminotransferase homolog 3.40.640.10 233 36 94 1.86 1.96
3b8xA01 88.63 Amino sugar and nucleotide sugar metabolismPutative pyridoxamine 5-phosphate-dependent dehydraseEscherichia coliCDP-6-deoxy-D-xylo-4-hexulose-3-dehydrase 3.40.640.10 258 28 88 1.46 1.65
1jg8A01 84.44 Thermotoga maritimaThreonine aldolase [EC:4.1.2.5]Glycine, serine and threonine metabolismMetabolic pathwaysL-allo-threonine aldolase 3.40.640.10 245 18 88 3.13 3.55
1bs0A02 83.76 Biotin metabolismMetabolic pathways8-amino-7-oxononanoate synthase [EC:2.3.1.47]8-amino-7-oxononanoate synthase activityBiotin biosynthetic process 3.40.640.10 228 14 86 2.91 3.37
1fc4A01 83.01 Glycine, serine and threonine metabolismMetal ion bindingLigase activity2-amino-3-ketobutyrate coenzyme A ligaseGlycine C-acetyltransferase [EC:2.3.1.29] 3.40.640.10 230 17 87 3.49 3.98
1o4sA02 82.22 Tyrosine metabolismThermotoga maritimaArginine and proline metabolismAspartate aminotransferase [EC:2.6.1.1]Metabolic pathways 3.40.640.10 221 17 81 3.46 4.23
1lc5A02 81.38 Porphyrin and chlorophyll metabolismSalmonella enterica subsp. enterica serovar TyphimuriumThreonine-phosphate decarboxylaseThreonine-phosphate decarboxylase [EC:4.1.1.81] 3.40.640.10 225 12 86 3.51 4.06
1gd9A02 81.19 Tyrosine metabolismArginine and proline metabolismAspartate aminotransferase [EC:2.6.1.1]Pyrococcus horikoshiiMetabolic pathways 3.40.640.10 223 16 81 3.68 4.50
2ez2A02 80.89 Citrobacter freundiiTyrosine phenol-lyase 3.40.640.10 253 16 80 2.79 3.46
1svvA01 80.74 Leishmania major strain FriedlinThreonine aldolase [EC:4.1.2.5]Glycine, serine and threonine metabolismMetabolic pathwaysPutative uncharacterized protein 3.40.640.10 242 12 87 2.98 3.40
3dydA02 80.54 Tyrosine metabolismL-tyrosine:2-oxoglutarate aminotransferase activityPhenylalanine metabolismMetabolic pathwaysUbiquinone and other terpenoid-quinone biosynthesis 3.40.640.10 244 14 86 3.47 4.03
1xi9A02 80.48 Pyrococcus furiosusAminotransferase [EC:2.6.1.-]Alanine aminotransferase 3.40.640.10 242 16 83 3.27 3.94
2oatA02 80.47 Ornithine--oxo-acid transaminase [EC:2.6.1.13]Arginine and proline metabolismOrnithine-oxo-acid transaminase activityVisual perceptionHomo sapiens 3.40.640.10 250 12 81 3.59 4.40
1c7nA02 80.27 Treponema denticolaHemolysin 3.40.640.10 225 11 81 3.31 4.05
2gsaA02 80.13 Porphyrin and chlorophyll metabolismGlutamate-1-semialdehyde 2,1-aminomutaseGlutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]Synechococcus elongatus PCC 6301Metabolic pathways 3.40.640.10 249 11 82 3.66 4.45
1d2fA02 80.07 Nitrogen metabolismSelenoamino acid metabolismSulfur metabolismMetabolic pathwaysCysteine and methionine metabolism 3.40.640.10 243 10 86 3.41 3.96
2qmaA03 79.57 Diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]Vibrio parahaemolyticusGlycine, serine and threonine metabolismDiaminobutyrate-pyruvate transaminase & L-2,4-diaminobutyrate decarboxylaseMetabolic pathways 3.40.640.10 238 11 79 3.07 3.85
1p3wA02 79.53 Thiamine metabolismCysteine desulfurase activitySelenocysteine lyase activityCysteine desulfuraseIron-sulfur cluster assembly 3.40.640.10 247 14 88 4.18 4.74
3ffhB02 79.34 Tyrosine metabolismListeria innocuaHistidinol-phosphate aminotransferase [EC:2.6.1.9]Histidine metabolismMetabolic pathways 3.40.640.10 208 13 80 3.37 4.21
1sffA02 79.04 Valine, leucine and isoleucine degradationPropanoate metabolismMetabolic pathwaysButanoate metabolismBeta-Alanine metabolism 3.40.640.10 260 11 80 3.98 4.97
1zodA02 78.98 2,2-dialkylglycine decarboxylaseBurkholderia cepacia 3.40.640.10 264 11 78 3.89 4.96
1t3iB02 78.88 Cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]Probable cysteine desulfuraseThiamine metabolismSelenoamino acid metabolismMetabolic pathways 3.40.640.10 258 13 86 3.95 4.59
3ftbA02 78.78 Tyrosine metabolismHistidinol-phosphate aminotransferase [EC:2.6.1.9]Histidine metabolismPhenylalanine metabolismMetabolic pathways 3.40.640.10 222 10 85 3.43 4.01
1s0aA02 78.74 Biotin metabolismMetabolic pathwaysAdenosylmethionine-8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]Adenosylmethionine-8-amino-7-oxononanoate aminotransferaseEscherichia coli K-12 3.40.640.10 268 8 75 3.60 4.75
1fg7A01 78.44 Tyrosine metabolismHistidine metabolismMetabolic pathwaysPhenylalanine metabolismNovobiocin biosynthesis 3.40.640.10 203 13 78 3.47 4.43
1m32A02 78.00 2-aminoethylphosphonate--pyruvate transaminaseSalmonella enterica subsp. enterica serovar Typhimurium2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37]Phosphonate and phosphinate metabolismMetabolic pathways 3.40.640.10 237 12 86 4.10 4.76
3k40A02 77.62 Dopamine biosynthetic process from tyrosineDevelopmental pigmentationGrowthProtein bindingDrosophila melanogaster 3.40.640.10 267 11 73 3.30 4.52
2hoxA02 77.30 Alliin lyase 1Allium sativum 3.40.640.10 210 10 73 3.66 4.99
Displaying entries 1 to 29 (page 1 of 1)


Domain ATOM Sequence

>pdb|2ogaA01
TPRVPFLDLKAAYEELRAETDAAIARVLDSGRYLLGPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLGIGPGDEV
IVPSHTYIASWLAVSATGATPVPVPTLDPLLVEKAITPRTRALLPVHLYGHPADMDALRELADRHGLHIVEDAAQAHGAR
YRGRRIGAGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAH    

Domain COMBS Sequence

>pdb|2ogaA01
TPRVPFLDLKAAYEELRAETDAAIARVLDSGRYLLGPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLGIGPGDEV
IVPSHTYIASWLAVSATGATPVPVPTLDPLLVEKAITPRTRALLPVHLYGHPADMDALRELADRHGLHIVEDAAQAHGAR
YRGRRIGAGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAH    

Domain History Events (10)

Domain assigned by auto on 22 Aug 2007 06:38

Assigning to "3.40.640.10" based on similarity with "2ogaC01"

Flow stage update by auto on 22 Aug 2007 06:38

No in_process hits for Domain "2ogaA01" ready to be processed

Update comment by auto on 22 Aug 2007 06:30

Domain "2ogaA01" hits Domain "2ogeD01" (99.581589958159% over 99.5833333333333%) which is currently in process

Update comment by auto on 22 Aug 2007 06:23

Domain "2ogaA01" hits Domain "2ogeA01" (99.581589958159% over 99.5833333333333%) which is currently in process

Update comment by auto on 22 Aug 2007 02:24

Domain "2ogaA01" hits Domain "2ogaC01" (100% over 99.5833333333333%) which is currently in process

Flow stage update by auto on 22 Aug 2007 02:15

Domain "2ogaA01" hits Domain "2ogaC01" (100% over 99.5833333333333%) which is currently in process

Flow stage update by auto on 22 Aug 2007 02:15

NW result present for Domain "2ogaA01"

Flow stage update by auto on 16 Aug 2007 17:16

All required files are present for Domain "2ogaA01"

Flow stage update by auto on 16 Aug 2007 00:03

Beginning processing for Domain "2ogaA01"

Insertion by auto on 15 Aug 2007 19:44

Final ChopClose added based on similarity with "2ogaB"