CATH Domain: 2o8tA01 XML data for domain: 2o8tA01

Molscript image for 2o8tA01
2o8tA01
PDB coordinates for domain 2o8tA01

PDB 2o8t, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.10 Thrombin, subunit H
2.40.10.10 Trypsin-like serine proteases Gene3D
2.40.10.10.47
2.40.10.10.47.1
2.40.10.10.47.1.1
2.40.10.10.47.1.1.1
2.40.10.10.47.1.1.1.1

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Segment boundaries for domain 2o8tA01

Chopping figure for domain 2o8tA01
DomainStart PDB ResidueStop PDB Residue
2o8tA01 16 27
2o8tA01 121 232
2o8tA02 28 120
2o8tA02 233 242

Structural Neighbourhood (10 entries)

There are 10 matching structural neighberhood comparisons for CATH ID 2.40.10.10.47.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 10 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3dfjA01 89.70 Protein processing (proteolytic)Prostate glandProtease, serine, 8 (prostasin)Plasma membraneExtracellular region 2.40.10.10 135 38 91 1.95 2.12
1elvA02 89.63 Whole blood and lymphComplement component 1, s subcomponentConnective tissueComplement and coagulation cascadesComplement C1s subcomponent precursor 2.40.10.10 126 30 92 2.19 2.36
2asuB01 89.58 Homo sapiensHepatocyte growth factor-like protein precursor 2.40.10.10 122 32 94 2.27 2.40
2hlcA02 89.56 Hypoderma lineatumCollagenase precursor 2.40.10.10 126 26 91 1.84 2.01
1si5H01 88.34 2.40.10.10 119 29 92 2.08 2.26
1y8tB02 79.97 Two-component system - GeneralProbable SERINE PROTEASE PEPDPutative serine protease PepDMycobacterium tuberculosis 2.40.10.10 111 15 66 2.29 3.45
2qf3B02 79.58 Protease degS precursorSerine protease DegSEscherichia coli K12Protein binding 2.40.10.10 103 14 71 2.94 4.14
1dleB02 79.37 Complement bindingHomo sapiensComplement factor B precursorComponent factor BComplement and coagulation cascades 2.40.10.10 142 18 73 2.89 3.95
1mbmA02 74.12 Replicase polyprotein 1abEquine arteritis virus Bucyrus 2.40.10.10 72 12 51 2.03 3.94
1svpA02 72.24 Sindbis virusStructural polyprotein 2.40.10.10 86 9 54 2.37 4.33
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Displaying entries 1 to 10 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2o8tA01
IIGGEFTTIENQIALPSMYNDPQFGTSCEITGFGKEQSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADP
QWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVS
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2o8tA01
IIGGEFTTIENQIALPSMYNDPQFGTSCEITGFGKEQSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADP
QWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVS
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 29 Dec 2007 14:14

Assigning to "2.40.10.10" based on similarity with "2nwnA01"

Flow stage update by auto on 29 Dec 2007 14:04

No in_process hits for Domain "2o8tA01" ready to be processed

Flow stage update by auto on 29 Dec 2007 14:04

NW result present for Domain "2o8tA01"

Flow stage update by auto on 29 Dec 2007 08:06

All required files are present for Domain "2o8tA01"

Flow stage update by auto on 28 Dec 2007 08:16

Beginning processing for Domain "2o8tA01"

Insertion by auto on 28 Dec 2007 08:05

Final ChopClose added based on similarity with "2nwnA"