CATH Domain: 2o8qA00

2o8qA00

PDB 2o8q, Chain A, Domain 0

CATH Code	Level Description	Links
2	Mainly Beta
2.60	Sandwich
2.60.120	Jelly Rolls
2.60.120.10	Jelly Rolls	Gene3D
2.60.120.10.24
2.60.120.10.24.1
2.60.120.10.24.1.1
2.60.120.10.24.1.1.1
2.60.120.10.24.1.1.1.1

Structure
Sequence
History

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Segment boundaries for domain 2o8qA00

Domain	Start PDB Residue	Stop PDB Residue
2o8qA00	0	128

What is a Structural Neighbour?

The term "structural neighbour" is used here to describe two CATH domains that share a degree of structural similarity. The SSAP algorithm is used to calculate this similarity and works by generating a structure-based pairwise alignment of the two domains then scoring this alignment using a RMSD score which has been normalised by the length of the larger domain divided by the number of aligned residues (SIMAX).

Structural Neighbourhood (2 entries)

There are 2 matching structural neighberhood comparisons for CATH ID 2.60.120.10.24.1.1.1.1 (SIMAX score < 5)

Match Depth	Match	SSAP score	Match Keywords	Match Superfamily	Length	Sequence Id	Overlap	RMSD	SIMAX
	2opkB01	81.04	Ralstonia eutropha JMP134Cupin 2 domain-containing proteinPutative uncharacterized protein	2.60.120.10	90	15	69	2.92	4.19
	2q30A01	77.86	Desulfovibrio desulfuricans subsp. desulfuricans str. G20Putative uncharacterized protein	2.60.120.10	85	20	67	3.12	4.64

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Domain ATOM Sequence

>pdb|2o8qA00
GKLQTTIQHEPKDGSGFDRREFFEYRDTGVNEATGGFGAHVIRAIPPTWHTHTVGFQLFYVLRGWVEFEYEDIGAVLEAG
GSAFQPPGVRHRELRHSDDLEVLEIVSPAGFATSVVDLE

BLAST against CATH

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Domain COMBS Sequence

>pdb|2o8qA00
GXKLQTTIQHEPKDGSGFDRGLREFFEYRDTGVNEATGGXFGAHVIRAIPGKEAKPTWHTHTVGFQLFYVLRGWVEFEYE
DIGAVXLEAGGSAFQPPGVRHRELRHSDDLEVLEIVSPAGFATSVVDLEEARKP

BLAST against CATH

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Domain History Events (12)

Domain assigned by auto on 14 Feb 2008 14:26

Assigning to "2.60.120.10" based on similarity with "2o8qB00"