CATH Domain: 2o5aA01

2o5aA01

PDB 2o5a, Chain A, Domain 1

CATH Code	Level Description	Links
3	Alpha Beta
3.30	2-Layer Sandwich
3.30.460	Beta Polymerase; domain 2
3.30.460.10	Beta Polymerase, domain 2	Gene3D
3.30.460.10.14
3.30.460.10.14.1
3.30.460.10.14.1.1
3.30.460.10.14.1.1.1
3.30.460.10.14.1.1.1.1

Structure
Sequence
History

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Segment boundaries for domain 2o5aA01

Domain	Start PDB Residue	Stop PDB Residue
2o5aA01	2	108

What is a Structural Neighbour?

The term "structural neighbour" is used here to describe two CATH domains that share a degree of structural similarity. The SSAP algorithm is used to calculate this similarity and works by generating a structure-based pairwise alignment of the two domains then scoring this alignment using a RMSD score which has been normalised by the length of the larger domain divided by the number of aligned residues (SIMAX).

Structural Neighbourhood (1 entries)

There are 1 matching structural neighberhood comparisons for CATH ID 3.30.460.10.14.1.1.1.1 (SIMAX score < 5)

Match Depth	Match	SSAP score	Match Keywords	Match Superfamily	Length	Sequence Id	Overlap	RMSD	SIMAX
	1cc8A00	75.85	Copper chaperone activityMetal homeostasis factor ATX1Protein bindingCytosolCopper ion transport	3.30.70.100	72	5	57	2.87	5.00

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Domain ATOM Sequence

>pdb|2o5aA01
SNQELLQLAVNAVDDKKAEQVVALNKGISLDFFLICHGNSEKQVQAIAHELKKVAQEQGIEIKRLEGYEQARWVLIDLGD
VVVHVFHKDERAYYNLEKLWP

BLAST against CATH

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Domain COMBS Sequence

>pdb|2o5aA01
XSNQELLQLAVNAVDDKKAEQVVALNXKGISLIADFFLICHGNSEKQVQAIAHELKKVAQEQGIEIKRLEGYEQARWVLI
DLGDVVVHVFHKDERAYYNLEKLWGDAP

BLAST against CATH

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Domain History Events (14)

Domain assigned by auto on 15 Apr 2008 14:22

Assigning to "3.30.460.10" based on similarity with "2o5aB01"

Flow stage update by auto on 15 Apr 2008 14:20

No in_process hits for Domain "2o5aA01" ready to be processed

Update comment by auto on 15 Apr 2008 14:14

Domain "2o5aA01" hits Domain "2o5aB01" (98.1481481481482% over 100%) which is currently in process

Update comment by auto on 15 Apr 2008 14:05

Domain "2o5aA01" hits Domain "2id1A01" (36.1904761904762% over 97.2222222222222%) which is currently in process