CATH Domain: 2nzhB00 XML data for domain: 2nzhB00

Molscript image for 2nzhB00
2nzhB00
PDB coordinates for domain 2nzhB00

PDB 2nzh, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.50 OB fold (Dihydrolipoamide Acetyltransferase, E2P)
2.40.50.140 Nucleic acid-binding proteins Gene3D
2.40.50.140.4
2.40.50.140.4.1
2.40.50.140.4.1.1
2.40.50.140.4.1.1.1
2.40.50.140.4.1.1.1.1

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Segment boundaries for domain 2nzhB00

Chopping figure for domain 2nzhB00
DomainStart PDB ResidueStop PDB Residue
2nzhB00 3 110

Structural Neighbourhood (7 entries)

There are 7 matching structural neighberhood comparisons for CATH ID 2.40.50.140.4.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 7 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1mkhA00 91.66 Aminoacyl-tRNA biosynthesisSelenoamino acid metabolismPyrococcus abyssiMethionyl-tRNA synthetaseMethionyl-tRNA synthetase [EC:6.1.1.10] 2.40.50.140 106 33 95 1.40 1.47
2cwpA00 89.40 112aa long hypothetical methionyl-tRNA synthetasePyrococcus horikoshii 2.40.50.140 109 28 96 1.71 1.78
1b7yB02 83.43 Aminoacyl-tRNA biosynthesisPhenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]Phenylalanyl-tRNA synthetase beta chainThermus thermophilus 2.40.50.140 116 16 81 3.43 4.19
1fl0A00 81.99 Leukocyte migrationAminoacyl-tRNA synthetase multienzyme complexProtein homodimerization activityNegative regulation of endothelial cell proliferationExtracellular space 2.40.50.140 164 24 62 1.79 2.85
1c9oA00 74.11 Bacillus caldolyticusCold shock protein cspBCold shock protein (beta-ribbon, CspA family) 2.40.50.140 66 7 57 2.87 5.00
3d31A02 73.88 Methanosarcina acetivoransPutative sulfate transport system ATP-binding proteinSulfate/molybdate ABC transporter, ATP-binding proteinABC transporters 2.40.50.140 46 26 42 1.91 4.48
1g29102 73.04 Maltose transport protein MalKThermococcus litoralis 2.40.50.140 45 13 41 2.01 4.82
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Displaying entries 1 to 7 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2nzhB00
VIDDFEKLDIRTGTIVKAEEFPEARVPAIKLVIDFGTEIGIKQSSAQITKRYKPEGLINKQVIAVVNFPPRRIAGFKSEV
LVLGGIPGQGDVVLLQPDQPVPNGTKIG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2nzhB00
GSHMAVIDDFEKLDIRTGTIVKAEEFPEARVPAIKLVIDFGTEIGIKQSSAQITKRYKPEGLINKQVIAVVNFPPRRIAG
FKSEVLVLGGIPGQGDVVLLQPDQPVPNGTKIG
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 01 Aug 2007 10:30

Assigning to "2.40.50.140" based on similarity with "1gd7A00"

Flow stage update by auto on 01 Aug 2007 10:26

No in_process hits for Domain "2nzhB00" ready to be processed

Flow stage update by auto on 01 Aug 2007 10:26

NW result present for Domain "2nzhB00"

Flow stage update by auto on 14 Jul 2007 06:02

All required files are present for Domain "2nzhB00"

Flow stage update by auto on 13 Jul 2007 18:42

Beginning processing for Domain "2nzhB00"

Insertion by auto on 13 Jul 2007 13:43

Final ChopClose added based on similarity with "1gd7A"