Domain assigned by cuff on 14 Feb 2008 13:35
i agree. same superfamily
CATH Domain: 2nyvA02
2nyvA02
PDB 2nyv, Chain A, Domain 2
Segment boundaries for domain 2nyvA02
| Domain | Start PDB Residue | Stop PDB Residue |
|---|---|---|
| 2nyvA01 | 2 | 17 |
| 2nyvA01 | 82 | 217 |
| 2nyvA02 | 18 | 81 |
Structural Neighbourhood (2 entries)
There are 2 matching structural neighberhood comparisons for CATH ID 1.10.150.240.21.1.1.1.1 (SIMAX score < 5)
[1]
Displaying entries 1 to 2 (page 1 of 1)
| Match Depth | Match | SSAP score | Match Keywords | Match Superfamily | Length | Sequence Id | Overlap | RMSD | SIMAX |
|---|---|---|---|---|---|---|---|---|---|
 |
2i7dA02 | 79.59 | 1.10.40.40 | 55 | 14 | 84 | 3.52 | 4.17 | |
|
1rykA00 | 75.16 | 1.10.1470.10 | 69 | 4 | 75 | 3.73 | 4.95 |
[1]
Displaying entries 1 to 2 (page 1 of 1)
Domain History Events (121)
Domain assignment manual match h by rupa on 03 Sep 2007 11:33
High ssap score, same fold and function
Homcheck review by rupa on 03 Sep 2007 11:33
High ssap score, same fold and function
Flow stage update by rupa on 03 Sep 2007 11:33
High ssap score, same fold and function
Homcheck allotment by rupa on 03 Sep 2007 11:26
User 'rupa' has allocated a domain to themselves for HomChecking with comment : Grabbed this domain via HomCheck's "Get Me A Domain" button.
Flow stage update by rupa on 03 Sep 2007 11:26
User 'rupa' has allocated a domain to themselves for HomChecking with comment : Grabbed this domain via HomCheck's "Get Me A Domain" button.
Flow stage update by auto on 02 Sep 2007 05:41
Domain "2nyvA02" SCOP scan with no results - no SCOP mapping
Domain scan scop cath by auto on 02 Sep 2007 05:40
Adding scan of type "DOMAIN_SCAN_SCOP_CATH" with 0 results for 2nyvA02
Flow stage update by auto on 02 Sep 2007 03:44
Retrieved PRC_PFAMCATH results for job ID SID9280725419375268 and results inserted.
Domain scan prc pfamcath by auto on 02 Sep 2007 03:44
Adding scan of type "DOMAIN_SCAN_PRC_PFAMCATH" with 0 results for 2nyvA02
Update comment by auto on 01 Sep 2007 14:58
PRC_PFAMCATH job SID9280725419375268 is not yet finished.
Flow stage update by auto on 01 Sep 2007 14:55
The entry "2nyvA02" has been submitted to the PRC_PFAMCATH webservice.
Prc pfamcath submit by auto on 01 Sep 2007 14:55
The entry "2nyvA02" has been submitted to the PRC_PFAMCATH webservice.
Flow stage update by auto on 01 Sep 2007 14:38
Retrieved SSAP results for job ID SID3863729169929440 and results inserted.
Domain scan ssap cath by auto on 01 Sep 2007 14:35
Adding scan of type "DOMAIN_SCAN_SSAP_CATH" with 2230 results for 2nyvA02
Update comment by auto on 31 Aug 2007 20:20
SSAP job SID3863729169929440 is not yet finished.
Ssap cath submit by auto on 31 Aug 2007 20:11
The entry "2nyvA02" has been submitted to the SSAP webservice.
Flow stage update by auto on 31 Aug 2007 20:11
The entry "2nyvA02" has been submitted to the SSAP webservice.
Flow stage update by auto on 30 Aug 2007 16:51
Giving up on SSAP job SID5590616278797906 because submission time of Tue Aug 28 14:54:50 2007 is more than 172800 seconds older than current time (Thu Aug 30 16:51:29 2007).
Update comment by auto on 28 Aug 2007 15:02
SSAP job SID5590616278797906 is not yet finished.
Ssap cath submit by auto on 28 Aug 2007 14:54
The entry "2nyvA02" has been submitted to the SSAP webservice.
Flow stage update by auto on 28 Aug 2007 14:54
The entry "2nyvA02" has been submitted to the SSAP webservice.
Flow stage update by auto on 28 Aug 2007 10:20
Giving up on SSAP job SID0305138146689920 because submission time of Sun Aug 26 09:13:23 2007 is more than 172800 seconds older than current time (Tue Aug 28 10:20:26 2007).
Update comment by auto on 26 Aug 2007 09:22
SSAP job SID0305138146689920 is not yet finished.
Flow stage update by auto on 26 Aug 2007 09:13
The entry "2nyvA02" has been submitted to the SSAP webservice.
Ssap cath submit by auto on 26 Aug 2007 09:13
The entry "2nyvA02" has been submitted to the SSAP webservice.
Flow stage update by auto on 26 Aug 2007 02:58
Giving up on SSAP job SID8797315837671792 because submission time of Thu Aug 23 22:36:10 2007 is more than 172800 seconds older than current time (Sun Aug 26 02:58:23 2007).
Update comment by auto on 23 Aug 2007 22:46
SSAP job SID8797315837671792 is not yet finished.
Ssap cath submit by auto on 23 Aug 2007 22:36
The entry "2nyvA02" has been submitted to the SSAP webservice.
Flow stage update by auto on 23 Aug 2007 22:36
The entry "2nyvA02" has been submitted to the SSAP webservice.
Flow stage update by auto on 23 Aug 2007 19:38
Giving up on SSAP job SID6223886386054464 because submission time of Tue Aug 21 10:57:44 2007 is more than 172800 seconds older than current time (Thu Aug 23 19:38:40 2007).
Update comment by auto on 21 Aug 2007 11:38
SSAP job SID6223886386054464 is not yet finished.
Ssap cath submit by auto on 21 Aug 2007 10:57
The entry "2nyvA02" has been submitted to the SSAP webservice.
Flow stage update by auto on 21 Aug 2007 10:57
The entry "2nyvA02" has been submitted to the SSAP webservice.
Flow stage update by auto on 21 Aug 2007 08:18
Giving up on SSAP job SID4019064208868290 because submission time of Sun Aug 19 07:36:52 2007 is more than 172800 seconds older than current time (Tue Aug 21 08:18:52 2007).
Update comment by auto on 19 Aug 2007 08:29
SSAP job SID4019064208868290 is not yet finished.
Ssap cath submit by auto on 19 Aug 2007 07:36
The entry "2nyvA02" has been submitted to the SSAP webservice.
Flow stage update by auto on 19 Aug 2007 07:36
The entry "2nyvA02" has been submitted to the SSAP webservice.
Flow stage update by auto on 19 Aug 2007 03:37
Giving up on SSAP job SID7504884966496832 because submission time of Thu Aug 16 23:28:45 2007 is more than 172800 seconds older than current time (Sun Aug 19 03:37:35 2007).
Update comment by auto on 17 Aug 2007 00:38
SSAP job SID7504884966496832 is not yet finished.
Flow stage update by auto on 16 Aug 2007 23:28
The entry "2nyvA02" has been submitted to the SSAP webservice.
Ssap cath submit by auto on 16 Aug 2007 23:28
The entry "2nyvA02" has been submitted to the SSAP webservice.
Flow stage update by auto on 16 Aug 2007 18:37
Giving up on SSAP job SID2171306321970112 because submission time of Tue Aug 14 09:09:00 2007 is more than 172800 seconds older than current time (Thu Aug 16 18:37:45 2007).
Update comment by auto on 14 Aug 2007 10:38
SSAP job SID2171306321970112 is not yet finished.
Flow stage update by auto on 14 Aug 2007 09:09
The entry "2nyvA02" has been submitted to the SSAP webservice.
Ssap cath submit by auto on 14 Aug 2007 09:09
The entry "2nyvA02" has been submitted to the SSAP webservice.
Flow stage update by auto on 14 Aug 2007 06:45
Retrieved PRC results for job ID SID4922674057154176 and inserted them into the database.
Domain scan prc cath by auto on 14 Aug 2007 06:44
Adding scan of type "DOMAIN_SCAN_PRC_CATH" with 3 results for 2nyvA02
Flow stage update by auto on 13 Aug 2007 10:42
The entry "2nyvA02" has been submitted to the PRC webservice.
Prc cath submit by auto on 13 Aug 2007 10:42
The entry "2nyvA02" has been submitted to the PRC webservice.
Flow stage update by auto on 13 Aug 2007 08:22
Retrieved HMM(SAM) results for job ID SID7264554393422024 and inserted them into the database.
Domain scan sam cath by auto on 13 Aug 2007 08:21
Adding scan of type "DOMAIN_SCAN_SAM_CATH" with 2 results for 2nyvA02
Update comment by auto on 12 Aug 2007 13:10
HMM(SAM) job SID7264554393422024 is not yet finished.
Flow stage update by auto on 12 Aug 2007 11:55
The entry "2nyvA02" has been submitted to the HMM (SAM) webservice.
Sam cath submit by auto on 12 Aug 2007 11:55
The entry "2nyvA02" has been submitted to the HMM (SAM) webservice.
Flow stage update by auto on 12 Aug 2007 04:29
Retrieved "2nyvA02" CATHEDRAL results for job ID SID2319688677189568 and inserted them into the database.
Domain scan cathedral cath by auto on 12 Aug 2007 04:28
Adding scan of type "DOMAIN_SCAN_CATHEDRAL_CATH" with 61 results for 2nyvA02
Update comment by auto on 11 Aug 2007 05:58
"2nyvA02" CATHEDRAL job SID2319688677189568 is not yet finished.
Cathedral cath submit by auto on 11 Aug 2007 04:26
The entry "2nyvA02" has been submitted to the CATHEDRAL webservice.
Flow stage update by auto on 11 Aug 2007 04:26
The entry "2nyvA02" has been submitted to the CATHEDRAL webservice.
Flow stage update by auto on 11 Aug 2007 02:32
ScanList with 9778 domains written to "/cath/data/current/scanlists/cathdb_current.fletcher/2nyvA02.scanlist" for "2nyvA02"
Write scan list by auto on 11 Aug 2007 02:32
Writing ScanList containing 9778 domains to file "/cath/data/current/scanlists/cathdb_current.fletcher/2nyvA02.scanlist" for domain "2nyvA02"
Update comment by auto on 10 Aug 2007 14:32
Waiting for 984 new domains (example : 1h4uA00) to be processed so that they can be scanned against too.
Update comment by auto on 10 Aug 2007 10:32
Waiting for 1052 new domains (example : 1h4uA00) to be processed so that they can be scanned against too.
Update comment by auto on 10 Aug 2007 06:45
Waiting for 1095 new domains (example : 1h4uA00) to be processed so that they can be scanned against too.
Update comment by auto on 10 Aug 2007 02:47
Waiting for 1146 new domains (example : 1h4uA00) to be processed so that they can be scanned against too.
Update comment by auto on 09 Aug 2007 22:33
Waiting for 1198 new domains (example : 1h4uA00) to be processed so that they can be scanned against too.
Update comment by auto on 09 Aug 2007 19:14
Waiting for 1261 new domains (example : 1h4uA00) to be processed so that they can be scanned against too.
Update comment by auto on 09 Aug 2007 14:58
Waiting for 1336 new domains (example : 1t6pF01) to be processed so that they can be scanned against too.
Update comment by auto on 09 Aug 2007 10:58
Waiting for 1377 new domains (example : 1t6pF01) to be processed so that they can be scanned against too.
Update comment by auto on 09 Aug 2007 06:45
Waiting for 1412 new domains (example : 1t6pF01) to be processed so that they can be scanned against too.
Update comment by auto on 09 Aug 2007 02:51
Waiting for 1457 new domains (example : 1t6pF01) to be processed so that they can be scanned against too.
Update comment by auto on 08 Aug 2007 22:35
Waiting for 1505 new domains (example : 1t6pF01) to be processed so that they can be scanned against too.
Update comment by auto on 08 Aug 2007 18:43
Waiting for 1577 new domains (example : 1t6pF01) to be processed so that they can be scanned against too.
Update comment by auto on 08 Aug 2007 14:42
Waiting for 1645 new domains (example : 1t6pF01) to be processed so that they can be scanned against too.
Update comment by auto on 08 Aug 2007 11:05
Waiting for 1704 new domains (example : 1t6pF01) to be processed so that they can be scanned against too.
Update comment by auto on 08 Aug 2007 06:51
Waiting for 1742 new domains (example : 1t6pF01) to be processed so that they can be scanned against too.
Update comment by auto on 08 Aug 2007 02:57
Waiting for 1792 new domains (example : 1t6pF01) to be processed so that they can be scanned against too.
Update comment by auto on 07 Aug 2007 22:46
Waiting for 1837 new domains (example : 1t6pF01) to be processed so that they can be scanned against too.
Update comment by auto on 07 Aug 2007 19:33
Waiting for 1893 new domains (example : 1t6pF01) to be processed so that they can be scanned against too.
Update comment by auto on 07 Aug 2007 15:14
Waiting for 1975 new domains (example : 1t6pF01) to be processed so that they can be scanned against too.
Update comment by auto on 07 Aug 2007 10:44
Waiting for 2056 new domains (example : 1t6pF01) to be processed so that they can be scanned against too.
Update comment by auto on 07 Aug 2007 06:56
Waiting for 2116 new domains (example : 1t6pF01) to be processed so that they can be scanned against too.
Update comment by auto on 07 Aug 2007 02:50
Waiting for 2178 new domains (example : 1t6pF01) to be processed so that they can be scanned against too.
Update comment by auto on 06 Aug 2007 22:37
Waiting for 2230 new domains (example : 1t6pF01) to be processed so that they can be scanned against too.
Update comment by auto on 06 Aug 2007 18:50
Waiting for 2293 new domains (example : 1t6pD03) to be processed so that they can be scanned against too.
Update comment by auto on 06 Aug 2007 14:44
Waiting for 2348 new domains (example : 1rqrB02) to be processed so that they can be scanned against too.
Update comment by auto on 06 Aug 2007 11:22
Waiting for 2404 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 06 Aug 2007 09:17
Waiting for 2415 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 06 Aug 2007 02:15
Waiting for 2528 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 05 Aug 2007 19:05
Waiting for 2652 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 05 Aug 2007 07:22
Waiting for 2828 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 05 Aug 2007 03:13
Waiting for 2883 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 04 Aug 2007 22:51
Waiting for 2924 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 04 Aug 2007 19:07
Waiting for 2965 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 04 Aug 2007 15:10
Waiting for 3034 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 04 Aug 2007 11:10
Waiting for 3098 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 04 Aug 2007 07:00
Waiting for 3152 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 04 Aug 2007 03:09
Waiting for 3197 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 03 Aug 2007 22:57
Waiting for 3216 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 03 Aug 2007 19:53
Waiting for 3206 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 03 Aug 2007 15:49
Waiting for 3198 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 03 Aug 2007 11:01
Waiting for 3055 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 03 Aug 2007 07:03
Waiting for 3126 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 03 Aug 2007 03:02
Waiting for 3204 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 02 Aug 2007 22:47
Waiting for 3254 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 02 Aug 2007 19:31
Waiting for 3282 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 02 Aug 2007 15:25
Waiting for 3339 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 02 Aug 2007 11:06
Waiting for 3395 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 02 Aug 2007 07:05
Waiting for 3471 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 02 Aug 2007 03:04
Waiting for 3542 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 01 Aug 2007 22:44
Waiting for 3606 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 01 Aug 2007 19:34
Waiting for 3650 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 01 Aug 2007 15:07
Waiting for 3730 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 01 Aug 2007 10:58
Waiting for 3800 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Flow stage update by auto on 01 Aug 2007 10:29
No satisfactory AssignClose result found.
Flow stage update by auto on 01 Aug 2007 10:26
No in_process hits for Domain "2nyvA02" ready to be processed
Flow stage update by auto on 01 Aug 2007 10:26
NW result present for Domain "2nyvA02"
Flow stage update by auto on 12 Jul 2007 02:02
All required files are present for Domain "2nyvA02"
Flow stage update by auto on 11 Jul 2007 16:04
Beginning processing for Domain "2nyvA02"
Insertion by cuff on 11 Jul 2007 16:03
nice chopping
