CATH Domain: 2ns0A00 XML data for domain: 2ns0A00

Molscript image for 2ns0A00
2ns0A00
PDB coordinates for domain 2ns0A00

PDB 2ns0, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.10 Arc Repressor Mutant, subunit A
1.10.10.10 "winged helix" repressor DNA binding domain Gene3D
1.10.10.10.17
1.10.10.10.17.1
1.10.10.10.17.1.1
1.10.10.10.17.1.1.1
1.10.10.10.17.1.1.1.1

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Segment boundaries for domain 2ns0A00

Chopping figure for domain 2ns0A00
DomainStart PDB ResidueStop PDB Residue
2ns0A00 2 85

Structural Neighbourhood (53 entries)

There are 53 matching structural neighberhood comparisons for CATH ID 1.10.10.10.17.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 53 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1sfuA00 86.48 Yaba-like disease virus34L protein 1.10.10.10 70 10 82 2.53 3.05
1w1wE00 85.92 Nuclear mitotic cohesin complexProtein acetylationChromatin bindingCohesin complex subunit SCC1Establishment of mitotic sister chromatid cohesion 1.10.10.580 70 18 82 3.39 4.09
1qbjC00 85.06 CytoplasmNucleolusHomo sapiensDouble-stranded RNA-specific adenosine deaminaseBase conversion or substitution editing 1.10.10.10 66 13 79 2.30 2.90
1s3jA02 84.16 Bacillus subtilisUncharacterized HTH-type transcriptional regulator yusO 1.10.10.10 62 19 71 2.53 3.52
3bz6A02 83.65 Hypothetical proteinPseudomonas syringae pv. tomatoUPF0502 protein PSPTO_2686 1.10.10.10 76 11 81 3.88 4.75
1hstA00 83.65 Histone H1/5Gallus gallusHistone H5 1.10.10.10 74 14 85 3.87 4.53
2heoA00 83.55 Mus musculusLeft-handed Z-DNA bindingZ-DNA-binding protein 1 1.10.10.10 59 13 71 2.29 3.18
3cuqB03 83.21 Homo sapiensVacuolar protein-sorting-associated protein 36ESCRT-II complex subunit VPS36Endocytosis 1.10.10.10 69 10 81 3.42 4.19
2g7uA01 83.07 Rhodococcus opacusPutative regulator of catechol degradative operon 1.10.10.10 74 13 78 3.80 4.87
1o57A01 83.07 Pur operon repressorBacillus subtilisPurine operon repressor 1.10.10.10 72 5 80 2.99 3.71
2ia2C01 83.05 Rhodococcus sp. DK17PcaR 1.10.10.10 60 20 73 2.77 3.79
1ldjA06 82.96 Cullin-1Cell cycle arrestInduction of apoptosis by intracellular signalsUbiquitin mediated proteolysisWnt signaling pathway 1.10.10.10 68 4 80 2.78 3.45
3cuqA02 82.89 ESCRT-II complex subunit VPS22Transcription factor bindingRegulation of transcription from RNA polymerase II promoterHomo sapiensVacuolar-sorting protein SNF8 1.10.10.10 81 14 85 3.41 3.99
3edpA01 82.86 Listeria innocuaLin2111 protein 1.10.10.10 75 8 78 3.07 3.93
1lvaA01 82.85 Selenocysteine-specific elongation factorSelenocysteine-specific elongation factorMoorella thermoacetica 1.10.10.10 59 15 71 2.60 3.61
2fnaA03 82.80 Sulfolobus solfataricusPutative uncharacterized protein 1.10.10.10 72 12 78 3.44 4.41
1ft9A02 82.76 Rhodospirillum rubrumCooA protein 1.10.10.10 79 7 75 3.06 4.05
1lvaA02 82.74 Selenocysteine-specific elongation factorSelenocysteine-specific elongation factorMoorella thermoacetica 1.10.10.10 69 5 78 3.24 4.15
1cf7B00 82.49 Protein domain specific bindingTranscription factor Dp-2Transcription cofactor activityHomo sapiens 1.10.10.10 82 9 84 3.23 3.84
1lvaA03 82.48 Selenocysteine-specific elongation factorSelenocysteine-specific elongation factorMoorella thermoacetica 1.10.10.10 62 9 75 3.03 4.01
2o0yB01 82.36 Rhodococcus jostii RHA1Transcriptional regulator 1.10.10.10 64 7 76 3.41 4.44
2hs5A01 82.36 Rhodococcus jostii RHA1Probable transcriptional regulator, GntR family protein 1.10.10.10 67 16 78 3.06 3.92
1mkmB01 82.33 Thermotoga maritimaTranscriptional regulator, IclR family 1.10.10.10 76 9 79 3.22 4.06
2p8tA01 82.32 Pyrococcus horikoshiiPutative uncharacterized protein PH0730 1.10.10.10 75 9 70 2.93 4.14
2hr3D02 82.24 Probable transcriptional regulatorPseudomonas aeruginosa 1.10.10.10 61 13 73 2.74 3.74
3by6C01 82.17 GntR family transcriptional regulatorOenococcus oeni PSU-1Transcriptional regulator, GntR family 1.10.10.10 77 10 78 3.23 4.14
2jt1A00 82.04 PefI proteinSalmonella enterica subsp. enterica serovar Typhimurium 1.10.10.10 71 19 81 3.31 4.05
1oyiA00 81.78 Vaccinia virusDouble-stranded RNA-binding protein 1.10.10.10 62 16 75 2.72 3.60
2fokA02 81.76 Planomicrobium okeanokoitesType-2 restriction enzyme FokI 1.10.10.10 82 10 81 3.90 4.77
1cf7A00 81.76 Protein domain specific bindingTranscription factor bindingE2F transcription factor 4/5Transcription factor E2F4TGF-beta signaling pathway 1.10.10.10 67 20 78 2.27 2.91
1yqaA00 81.72 Histone H1/5Regulation of transcription, DNA-dependentDNA bindingNuclear nucleosomeHistone H1 1.10.10.10 87 10 81 4.06 4.97
2ia2D01 81.54 Rhodococcus sp. DK17PcaR 1.10.10.10 57 21 69 3.25 4.68
2o0yC01 81.39 Rhodococcus jostii RHA1Transcriptional regulator 1.10.10.10 73 6 74 3.29 4.42
1xb4B02 81.38 Protein targeting to vacuoleESCRT-II complex subunit VPS25Saccharomyces cerevisiaeESCRT II complexVacuolar protein-sorting-associated protein 25 1.10.10.10 75 10 84 3.35 3.98
1hw5A02 81.32 TranscriptionTranscription activator activityTranscription repressor activityCRP/FNR family transcriptional regulator, cyclic AMP receptor proteinCatabolite gene activator 1.10.10.10 68 11 68 2.30 3.37
1lvaA04 81.15 Selenocysteine-specific elongation factorSelenocysteine-specific elongation factorMoorella thermoacetica 1.10.10.10 60 11 73 3.55 4.85
3ctaA01 81.09 Riboflavin metabolismRiboflavin kinaseRiboflavin kinase, archaea type [EC:2.7.1.161]Thermoplasma acidophilum 1.10.10.10 84 8 76 3.58 4.70
2dtrA01 80.91 DtxR family transcriptional regulator, Mn-dependent transcriptional regulatorDiphtheria toxin repressorCorynebacterium diphtheriae 1.10.10.10 71 12 74 3.70 4.97
1j5yA01 80.82 Thermotoga maritimaTranscriptional regulator, biotin repressor family 1.10.10.10 64 12 78 3.52 4.51
3c7jA01 80.74 Pseudomonas syringae pv. syringaeRegulatory protein GntR 1.10.10.10 87 13 72 3.12 4.31
1biaA01 80.73 Biotin metabolismDNA bindingBirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]Bifunctional protein birABiotin-[acetyl-CoA-carboxylase] ligase activity 1.10.10.10 64 12 76 3.73 4.85
1lddA00 80.58 Mitotic sister chromatid segregationProtein ubiquitinationCyclin catabolic processMeiosis - yeastAnaphase-promoting complex subunit 2 1.10.10.10 74 14 78 3.40 4.36
1ufmA00 80.42 COP9 signalosome complex subunit 4Mus musculusProtein bindingSignalosome 1.10.10.10 84 10 78 3.12 3.97
2qm3A01 79.59 Pyrococcus furiosusPutative uncharacterized protein 1.10.10.10 81 11 71 3.53 4.91
3h92A00 79.51 Methanocaldococcus jannaschiiUncharacterized ATP-binding protein MJECL15 1.10.10.10 85 4 64 3.22 4.98
1vm0A00 78.77 Arabidopsis thalianaUncharacterized protein At2g34160 3.30.110.20 89 4 68 3.24 4.73
1u5tB02 78.42 Protein targeting to vacuoleVacuolar protein-sorting-associated protein 36Protein retention in Golgi apparatusUbiquitin bindingEndocytosis 1.10.10.10 69 10 82 4.06 4.90
1d8jA00 78.28 Basal transcription factorsTranscription initiation factor IIE subunit betaTranscription initiation factor TFIIE beta subunitHomo sapiensProtein binding 1.10.10.10 81 7 80 3.61 4.49
1t6sB01 77.67 Chlorobaculum tepidumSegregation and condensation protein BSegregation and condensation protein B 1.10.10.10 85 7 72 3.47 4.76
3bwgB01 76.92 GntR family transcriptional regulator, transcriptional regulator of bglABacillus subtilisUncharacterized HTH-type transcriptional regulator yydK 1.10.10.10 68 4 76 3.44 4.48
1ldkB03 76.67 Cullin-1Cell cycle arrestInduction of apoptosis by intracellular signalsUbiquitin mediated proteolysisWnt signaling pathway 1.10.10.10 83 4 79 3.72 4.68
1dcjA00 76.35 Sulfurtransferase tusATRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]Escherichia coli K-12 3.30.110.40 81 7 74 3.19 4.29
1s6lA01 76.31 Alkylmercury lyaseEscherichia coli 1.10.10.10 52 13 63 2.67 4.21
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Displaying entries 1 to 53 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2ns0A00
TVSDRELEECIRALLDARADSASICPSDVARAVAPDDWRPLEPVREAAGRLADAGEVEVTQKGAVVDPRSARGPIRIRWT
RTD
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2ns0A00
XTVSDRELEECIRALLDARADSASICPSDVARAVAPDDWRPLXEPVREAAGRLADAGEVEVTQKGAVVDPRSARGPIRIR
WTRTD
BLAST against CATH

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Domain History Events (54)

Domain assigned by cuff on 14 Feb 2008 16:15

i agree, same superfamily

Domain assignment manual match h by rupa on 10 Sep 2007 14:47

High ssap score, same fold, unknown function. Suggest score high enough for homology.

Homcheck review by rupa on 10 Sep 2007 14:47

High ssap score, same fold, unknown function. Suggest score high enough for homology.

Flow stage update by rupa on 10 Sep 2007 14:47

High ssap score, same fold, unknown function. Suggest score high enough for homology.

Homcheck allotment by rupa on 10 Sep 2007 12:13

User 'rupa' has allocated a domain to themselves for HomChecking with comment : Grabbed this domain via HomCheck's "Get Me A Domain" button.

Flow stage update by rupa on 10 Sep 2007 12:13

User 'rupa' has allocated a domain to themselves for HomChecking with comment : Grabbed this domain via HomCheck's "Get Me A Domain" button.

Flow stage update by auto on 08 Sep 2007 23:45

Domain "2ns0A00" SCOP scan with no results - no SCOP mapping

Domain scan scop cath by auto on 08 Sep 2007 23:44

Adding scan of type "DOMAIN_SCAN_SCOP_CATH" with 0 results for 2ns0A00

Flow stage update by auto on 08 Sep 2007 23:32

Retrieved PRC_PFAMCATH results for job ID SID2972501382112484 and results inserted.

Domain scan prc pfamcath by auto on 08 Sep 2007 23:31

Adding scan of type "DOMAIN_SCAN_PRC_PFAMCATH" with 0 results for 2ns0A00

Update comment by auto on 08 Sep 2007 19:33

PRC_PFAMCATH job SID2972501382112484 is not yet finished.

Prc pfamcath submit by auto on 08 Sep 2007 19:18

The entry "2ns0A00" has been submitted to the PRC_PFAMCATH webservice.

Flow stage update by auto on 08 Sep 2007 19:18

The entry "2ns0A00" has been submitted to the PRC_PFAMCATH webservice.

Flow stage update by auto on 08 Sep 2007 18:30

Retrieved SSAP results for job ID SID5417250873881312 and results inserted.

Domain scan ssap cath by auto on 08 Sep 2007 18:26

Adding scan of type "DOMAIN_SCAN_SSAP_CATH" with 3246 results for 2ns0A00

Update comment by auto on 05 Sep 2007 19:29

SSAP job SID5417250873881312 is not yet finished.

Flow stage update by auto on 05 Sep 2007 16:00

The entry "2ns0A00" has been submitted to the SSAP webservice.

Ssap cath submit by auto on 05 Sep 2007 16:00

The entry "2ns0A00" has been submitted to the SSAP webservice.

Flow stage update by auto on 05 Sep 2007 08:00

Retrieved PRC results for job ID SID0423969236337856 and inserted them into the database.

Domain scan prc cath by auto on 05 Sep 2007 07:59

Adding scan of type "DOMAIN_SCAN_PRC_CATH" with 1 results for 2ns0A00

Prc cath submit by auto on 05 Sep 2007 03:37

The entry "2ns0A00" has been submitted to the PRC webservice.

Flow stage update by auto on 05 Sep 2007 03:37

The entry "2ns0A00" has been submitted to the PRC webservice.

Flow stage update by auto on 04 Sep 2007 16:47

Retrieved HMM(SAM) results for job ID SID2636395542990888 and inserted them into the database.

Domain scan sam cath by auto on 04 Sep 2007 16:46

Adding scan of type "DOMAIN_SCAN_SAM_CATH" with 1 results for 2ns0A00

Update comment by auto on 04 Sep 2007 11:43

HMM(SAM) job SID2636395542990888 is not yet finished.

Sam cath submit by auto on 04 Sep 2007 09:49

The entry "2ns0A00" has been submitted to the HMM (SAM) webservice.

Flow stage update by auto on 04 Sep 2007 09:49

The entry "2ns0A00" has been submitted to the HMM (SAM) webservice.

Flow stage update by auto on 03 Sep 2007 23:44

Retrieved "2ns0A00" CATHEDRAL results for job ID SID3123762605984576 and inserted them into the database.

Domain scan cathedral cath by auto on 03 Sep 2007 23:43

Adding scan of type "DOMAIN_SCAN_CATHEDRAL_CATH" with 68 results for 2ns0A00

Cathedral cath submit by auto on 03 Sep 2007 13:56

The entry "2ns0A00" has been submitted to the CATHEDRAL webservice.

Flow stage update by auto on 03 Sep 2007 13:56

The entry "2ns0A00" has been submitted to the CATHEDRAL webservice.

Flow stage update by auto on 03 Sep 2007 11:53

ScanList with 11099 domains written to "/cath/data/current/scanlists/cathdb_current.fletcher/2ns0A00.scanlist" for "2ns0A00"

Write scan list by auto on 03 Sep 2007 11:53

Writing ScanList containing 11099 domains to file "/cath/data/current/scanlists/cathdb_current.fletcher/2ns0A00.scanlist" for domain "2ns0A00"

Update comment by auto on 03 Sep 2007 10:10

Waiting for 18 new domains (example : 2qg4C01) to be processed so that they can be scanned against too.

Update comment by auto on 03 Sep 2007 06:31

Waiting for 73 new domains (example : 2q3eK03) to be processed so that they can be scanned against too.

Update comment by auto on 03 Sep 2007 02:36

Waiting for 140 new domains (example : 2q08A02) to be processed so that they can be scanned against too.

Update comment by auto on 02 Sep 2007 22:32

Waiting for 188 new domains (example : 2o3jA01) to be processed so that they can be scanned against too.

Update comment by auto on 02 Sep 2007 18:21

Waiting for 279 new domains (example : 2b43C04) to be processed so that they can be scanned against too.

Update comment by auto on 02 Sep 2007 14:21

Waiting for 351 new domains (example : 1sh0B02) to be processed so that they can be scanned against too.

Update comment by auto on 02 Sep 2007 10:14

Waiting for 431 new domains (example : 1r0kA03) to be processed so that they can be scanned against too.

Update comment by auto on 02 Sep 2007 02:26

Waiting for 551 new domains (example : 1bplB01) to be processed so that they can be scanned against too.

Update comment by auto on 01 Sep 2007 22:11

Waiting for 607 new domains (example : 1bplB01) to be processed so that they can be scanned against too.

Update comment by auto on 01 Sep 2007 18:13

Waiting for 686 new domains (example : 1bplB01) to be processed so that they can be scanned against too.

Update comment by auto on 01 Sep 2007 14:15

Waiting for 771 new domains (example : 1bplB01) to be processed so that they can be scanned against too.

Update comment by auto on 01 Sep 2007 11:40

Waiting for 841 new domains (example : 1bplB01) to be processed so that they can be scanned against too.

Update comment by auto on 01 Sep 2007 06:14

Waiting for 903 new domains (example : 1bplB01) to be processed so that they can be scanned against too.

Update comment by auto on 01 Sep 2007 03:31

Waiting for 969 new domains (example : 1bplB01) to be processed so that they can be scanned against too.

Update comment by auto on 31 Aug 2007 20:05

Waiting for 1085 new domains (example : 1bplB01) to be processed so that they can be scanned against too.

Flow stage update by auto on 31 Aug 2007 19:58

No satisfactory AssignClose result found.

Flow stage update by auto on 31 Aug 2007 19:48

No in_process hits for Domain "2ns0A00" ready to be processed

Flow stage update by auto on 31 Aug 2007 19:48

NW result present for Domain "2ns0A00"

Flow stage update by auto on 23 Aug 2007 10:08

All required files are present for Domain "2ns0A00"

Flow stage update by auto on 22 Aug 2007 18:23

Beginning processing for Domain "2ns0A00"

Insertion by cuff on 22 Aug 2007 17:01

nice chopping