CATH Domain: 2napA04 XML data for domain: 2napA04

Molscript image for 2napA04
2napA04
PDB coordinates for domain 2napA04

PDB 2nap, Chain A, Domain 4

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.40 Barwin-like endoglucanases
2.40.40.20 Gene3D
2.40.40.20.3
2.40.40.20.3.1
2.40.40.20.3.1.1
2.40.40.20.3.1.1.1
2.40.40.20.3.1.1.1.1

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Segment boundaries for domain 2napA04

Chopping figure for domain 2napA04
DomainStart PDB ResidueStop PDB Residue
2napA01 4 61
2napA02 62 139
2napA02 346 562
2napA03 140 345
2napA03 563 594
2napA04 610 723

Structural Neighbourhood (14 entries)

There are 14 matching structural neighberhood comparisons for CATH ID 2.40.40.20.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 14 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2iv2X04 88.85 Methane metabolismMetabolic pathwaysGlyoxylate and dicarboxylate metabolismFormate dehydrogenase HFormate dehydrogenase, alpha subunit [EC:1.2.1.2] 2.40.40.20 99 33 84 1.27 1.51
1kqfA04 83.45 Two-component systemMetabolic pathwaysGlyoxylate and dicarboxylate metabolismMethane metabolismFormate dehydrogenase-N, alpha subunit [EC:1.2.1.2] 2.40.40.20 176 32 63 1.33 2.09
1eu1A04 82.05 Rhodobacter sphaeroidesDimethyl sulfoxide reductase 2.40.40.20 163 26 68 2.14 3.14
1q16A13 81.71 Nitrogen metabolismTwo-component systemRespiratory nitrate reductase 1 alpha chainProtein bindingIntrinsic to membrane 2.40.40.20 150 16 66 1.93 2.90
1e32A01 81.08 Mus musculusPolyubiquitin bindingProtein complexAggresome assemblyTransitional endoplasmic reticulum ATPase 2.40.40.20 87 11 70 2.22 3.16
2vpzA05 80.26 Thermus thermophilus HB27Thiosulfate reductase [EC:1.-.-.-]Thiosulfate reductase 2.40.40.20 159 22 70 2.19 3.11
1wlfA01 79.37 Mus musculusPeroxisome biogenesis factor 1 2.40.40.20 84 7 67 2.16 3.20
1cr5A01 79.27 Mating projection tipVesicular-fusion protein SEC18Vacuole fusion, non-autophagicATPase activityER to Golgi vesicle-mediated transport 2.40.40.20 77 10 65 2.64 4.01
1qcsA01 79.16 Vesicle-fusing ATPaseCricetulus griseusProtein binding 2.40.40.20 81 17 68 3.05 4.46
1i50A03 79.04 Pyrimidine metabolismDNA-directed RNA polymerase II subunit A [EC:2.7.7.6]Purine metabolismRNA polymeraseProtein binding 2.40.40.20 101 5 65 2.33 3.54
2c45A00 78.75 Beta-Alanine metabolismPantothenate and CoA biosynthesisMetabolic pathwaysAspartate 1-decarboxylase [EC:4.1.1.11]Aspartate 1-decarboxylase 2.40.40.20 113 5 65 2.23 3.39
1cz4A01 78.56 VCP-like ATPaseTransitional endoplasmic reticulum ATPaseThermoplasma acidophilum 2.40.40.20 92 14 71 2.85 4.01
1uheA00 77.17 Helicobacter pyloriAspartate 1-decarboxylase [EC:4.1.1.11]Beta-Alanine metabolismAspartate 1-decarboxylasePantothenate and CoA biosynthesis 2.40.40.20 97 9 54 2.02 3.71
1vc3B00 76.76 Thermus thermophilus HB8Aspartate 1-decarboxylase [EC:4.1.1.11]Beta-Alanine metabolismAspartate 1-decarboxylasePantothenate and CoA biosynthesis 2.40.40.20 95 7 55 2.08 3.76
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Displaying entries 1 to 14 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2napA04
PLYLTSMRVIDHWHTATMTGKVPELQKANPIAFVEINEEDAARTGIKHGDSVIVETRRDAMELPARVSDVCRPGLIAVPF
FDPKKLVNKLFLDATDPVSREPEYKICAARVRKA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2napA04
PLYLTSMRVIDHWHTATMTGKVPELQKANPIAFVEINEEDAARTGIKHGDSVIVETRRDAMELPARVSDVCRPGLIAVPF
FDPKKLVNKLFLDATDPVSREPEYKICAARVRKA
BLAST against CATH

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Domain History Events (7)

Domain assigned by lewis on 09 Jan 2007 13:16

Assigning domain 2napA04 to 2.40.40.20 (as agreed with the CATH update team) after the chain has been rechopped. The reason is that the domain is very similar to the old domain 2napA04 (from the previous chopping at "Sun Mar 5 17:55:22 2006") which was in 2.40.40.20 at the time the chain was unchopped.

Flow stage update by auto on 22 Dec 2006 23:35

No satisfactory AssignClose result found.

Flow stage update by auto on 22 Dec 2006 23:31

No in_process hits for Domain "2napA04" ready to be processed

Flow stage update by auto on 22 Dec 2006 23:31

NW result present for Domain "2napA04"

Flow stage update by auto on 18 Dec 2006 15:29

All required files are present for Domain "2napA04"

Flow stage update by auto on 18 Dec 2006 15:29

Beginning processing for Domain "2napA04"

Insertion by cuff on 18 Dec 2006 12:59

nice selection of choppings