CATH Domain: 2jwaA00 XML data for domain: 2jwaA00

Molscript image for 2jwaA00
2jwaA00
PDB coordinates for domain 2jwaA00

PDB 2jwa, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.5 Single alpha-helices involved in coiled-coils or other helix-helix interfaces
1.20.5.100 Gene3D
1.20.5.100.7
1.20.5.100.7.1
1.20.5.100.7.1.1
1.20.5.100.7.1.1.1
1.20.5.100.7.1.1.1.1

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Segment boundaries for domain 2jwaA00

Chopping figure for domain 2jwaA00
DomainStart PDB ResidueStop PDB Residue
2jwaA00 41 84

Structural Neighbourhood (30 entries)

There are 30 matching structural neighberhood comparisons for CATH ID 1.20.5.100.7.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 30 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1piqA00 86.85 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyGeneral control protein GCN4General control protein GCN4Specific RNA polymerase II transcription factor activity 1.20.5.170 31 3 70 0.93 1.32
1hf9A00 85.99 Protein homodimerization activityNegative regulation of hydrolase activityATPase inhibitor activityBos taurusATPase binding 1.20.5.500 41 2 86 4.17 4.83
2o1kA00 85.43 Simian rotavirus A/SA11-bothNon-structural glycoprotein 4 1.20.5.430 42 4 79 3.07 3.86
1slqF02 84.83 Outer capsid protein VP4Rhesus rotavirus 1.20.5.170 32 9 72 1.16 1.59
1ltsC00 84.76 Heat-labile enterotoxin A chainEscherichia coli 1.20.5.240 41 9 84 3.96 4.71
1a2xB00 84.73 Troponin I, fast skeletal muscleTroponin T bindingOryctolagus cuniculus 1.20.5.420 31 6 70 2.33 3.31
1ybkA00 82.90 TetrabrachionStaphylothermus marinus 1.20.5.1060 52 6 69 3.36 4.85
2qjyC01 82.83 Oxidative phosphorylationMetabolic pathwaysRhodobacter sphaeroidesUbiquinol-cytochrome c reductase iron-sulfur subunitUbiquinol-cytochrome c reductase iron-sulfur subunit [EC:1.10.2.2] 1.20.5.510 33 9 75 3.50 4.67
1owaA01 82.72 Structural constituent of cytoskeletonSpectrinHomo sapiensSpectrin-associated cytoskeletonActin filament organization 1.20.5.170 32 0 72 1.69 2.32
1vf5C03 82.29 Mastigocladus laminosusApocytochrome f 1.20.5.700 32 12 72 2.15 2.96
2hr3A01 82.26 Probable transcriptional regulatorPseudomonas aeruginosa 1.20.5.420 30 10 68 2.91 4.27
1ow6A01 81.81 Focal adhesion kinase 1Focal adhesionCytoskeletonIntegrin-mediated signaling pathwayHomo sapiens 1.20.5.540 30 3 63 1.94 3.05
1fs0E02 80.86 Oxidative phosphorylationMetabolic pathwaysATP synthase epsilon chainF-type H+-transporting ATPase subunit epsilon [EC:3.6.3.14]Escherichia coli K-12 1.20.5.440 38 7 65 3.29 4.99
2r44A01 80.67 Cytophaga hutchinsonii ATCC 33406MoxR-like ATPase [EC:3.6.3.-]Putative uncharacterized protein 1.20.5.420 26 7 59 1.11 1.88
1s3jB01 80.65 Bacillus subtilisUncharacterized HTH-type transcriptional regulator yusO 1.20.5.420 30 6 68 2.85 4.18
3bz1H01 80.55 PhotosynthesisThermosynechococcus elongatus BP-1Photosystem II PsbH proteinPhotosystem II reaction center protein HMetabolic pathways 1.20.5.880 51 6 72 2.98 4.11
1qexA01 80.34 Enterobacteria phage T4Baseplate structural protein Gp9 1.20.5.960 35 5 68 2.97 4.36
2pjuD03 80.12 Positive regulation of gene-specific transcriptionPropionate catabolism operon regulatory proteinNegative regulation of gene-specific transcriptionEscherichia coli K-12Specific transcriptional repressor activity 1.20.5.170 41 2 63 3.08 4.84
2p1jA02 79.06 Thermotoga maritimaPyrimidine metabolismDNA replicationPurine metabolismMetabolic pathways 1.20.5.140 26 11 59 2.36 3.99
2oarE02 79.00 Large conductance mechanosensitive channel, MscL familyLarge-conductance mechanosensitive channelMycobacterium tuberculosis H37Ra 1.20.5.220 22 9 50 1.35 2.70
1ozhA03 78.55 Acetolactate synthase, catabolicKlebsiella pneumoniae 1.20.5.740 24 4 54 1.96 3.59
1be3K00 78.34 Cardiac muscle contractionCytochrome b-c1 complex subunit 10Oxidative phosphorylationParkinson's diseaseAlzheimer's disease 1.20.5.220 22 13 50 1.03 2.06
2e74B01 77.74 Cytochrome b6-f complex subunit 4Mastigocladus laminosus 4.10.81.10 58 6 70 3.53 4.99
1mqsB00 77.26 Vesicle fusionSyntaxin 5SNAP receptor activityER to Golgi vesicle-mediated transportRetrograde vesicle-mediated transport, Golgi to ER 1.20.5.460 26 3 59 2.24 3.79
1h8bB00 77.25 TitinOryctolagus cuniculus 1.20.5.510 23 13 52 2.21 4.23
1vl2B03 77.02 Thermotoga maritimaArginine and proline metabolismArgininosuccinate synthase [EC:6.3.4.5]Alanine, aspartate and glutamate metabolismArgininosuccinate synthase 1.20.5.470 30 16 68 2.91 4.27
2pp6A01 76.37 Salmonella enterica subsp. enterica serovar TyphimuriumGifsy-2 prophage ATP-binding sugar transporter-like protein 1.20.5.110 21 9 47 1.09 2.28
3c8vA04 74.89 Desulfovibrio desulfuricans subsp. desulfuricans str. G20Putative uncharacterized protein 1.20.5.510 19 0 43 0.80 1.85
1mslA02 70.61 1.20.5.220 18 0 40 1.40 3.42
1d66B02 68.54 Regulatory protein GAL4NucleusSequence-specific DNA binding transcription factor activityTranscription activator activityPositive regulation of transcription by galactose 1.20.5.640 15 20 34 0.43 1.26
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Displaying entries 1 to 30 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2jwaA00
GCPAEQRASPLTSIISAVVGILLVVVLGVVFGILIKRRQQKIRK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2jwaA00
GCPAEQRASPLTSIISAVVGILLVVVLGVVFGILIKRRQQKIRK
BLAST against CATH

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Domain History Events (8)

Domain assigned by auto on 03 Mar 2009 21:15

Assigning to "1.20.5.100" based on similarity with "2jwaB00"

Flow stage update by auto on 03 Mar 2009 21:00

No in_process hits for Domain "2jwaA00" ready to be processed

Update comment by auto on 14 Sep 2008 08:32

Domain "2jwaA00" hits Domain "2jwaB00" (100% over 100%) which is currently in process

Flow stage update by auto on 14 Sep 2008 08:30

Domain "2jwaA00" hits Domain "2jwaB00" (100% over 100%) which is currently in process

Flow stage update by auto on 14 Sep 2008 08:30

NW result present for Domain "2jwaA00"

Flow stage update by auto on 11 Sep 2008 11:06

All required files are present for Domain "2jwaA00"

Flow stage update by auto on 10 Sep 2008 17:44

Beginning processing for Domain "2jwaA00"

Insertion by cuff on 10 Sep 2008 11:51

nice chopping