CATH Domain: 2jkbA02 XML data for domain: 2jkbA02

Molscript image for 2jkbA02
2jkbA02
PDB coordinates for domain 2jkbA02

PDB 2jkb, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.120 6 Propellor
2.120.10 Neuraminidase
2.120.10.10 Gene3D
2.120.10.10.5
2.120.10.10.5.1
2.120.10.10.5.1.1
2.120.10.10.5.1.1.1
2.120.10.10.5.1.1.1.1

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Segment boundaries for domain 2jkbA02

Chopping figure for domain 2jkbA02
DomainStart PDB ResidueStop PDB Residue
2jkbA01 37 228
2jkbA02 229 357
2jkbA02 456 697
2jkbA03 358 455

Structural Neighbourhood (4 entries)

There are 4 matching structural neighberhood comparisons for CATH ID 2.120.10.10.5.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 4 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1w8oA01 84.86 Micromonospora viridifaciensSialidase 2.120.10.10 354 20 87 2.41 2.76
1w0pA02 82.47 Vibrio choleraeSialidase 2.120.10.10 377 19 85 2.73 3.19
1v0eD02 76.77 Enterobacteria phage K1FEndo-N-acetylneuraminidase 2.120.10.10 360 12 82 3.71 4.50
1ofzA00 74.81 Fucose-specific lectinAleuria aurantia 2.120.10.70 312 10 74 3.59 4.81
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Displaying entries 1 to 4 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2jkbA02
FQLIFQSGDSTQANYFRIPTLYTLSSGRVLSSIDARYGGTHDSKSKINIATSYSDDNGKTWSEPIFAMKFNDYEEQLVYW
PRDNKLKNSQISGSASFIDSSIVEDKKSGKTILLADVMPAGIGNNNANKTNYIAMTTSQNRGESWEQFKLLPPFLGEKHN
GTYLCPGQGLALKSSNRLIFATYTSGELTYLISDDSGQTWKKSSASIPFKNATAEAQMVELRDGVIRTFFRTTTGKIAYM
TSRDSGETWSKVSYIDGIQQTSYGTQVSAIKYSQLIDGKEAVILSTPNSRSGRKGGQLVVGLVNKEDDSIDWKYHYDIDL
PSYGYAYSAITELPNHHIGVLFEKYDSWSRNELHLSNVVQYIDLEINDLTK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2jkbA02
FQLIFQSGDSTQANYFRIPTLYTLSSGRVLSSIDARYGGTHDSKSKINIATSYSDDNGKTWSEPIFAMKFNDYEEQLVYW
PRDNKLKNSQISGSASFIDSSIVEDKKSGKTILLADVMPAGIGNNNANKTNYIAMTTSQNRGESWEQFKLLPPFLGEKHN
GTYLCPGQGLALKSSNRLIFATYTSGELTYLISDDSGQTWKKSSASIPFKNATAEAQMVELRDGVIRTFFRTTTGKIAYM
TSRDSGETWSKVSYIDGIQQTSYGTQVSAIKYSQLIDGKEAVILSTPNSRSGRKGGQLVVGLVNKEDDSIDWKYHYDIDL
PSYGYAYSAITELPNHHIGVLFEKYDSWSRNELHLSNVVQYIDLEINDLTK
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 20 Sep 2008 23:26

Assigning to "2.120.10.10" based on similarity with "2vw0A02"

Flow stage update by auto on 20 Sep 2008 23:11

NW result present for Domain "2jkbA02"

Flow stage update by auto on 20 Sep 2008 23:11

No in_process hits for Domain "2jkbA02" ready to be processed

Flow stage update by auto on 20 Sep 2008 08:40

All required files are present for Domain "2jkbA02"

Flow stage update by auto on 19 Sep 2008 11:28

Beginning processing for Domain "2jkbA02"

Insertion by auto on 19 Sep 2008 11:22

Final ChopClose added based on similarity with "2vw1A"