CATH Domain: 2jafA00 XML data for domain: 2jafA00

Molscript image for 2jafA00
2jafA00
PDB coordinates for domain 2jafA00

PDB 2jaf, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.1070 Rhopdopsin 7-helix transmembrane proteins
1.20.1070.10 Rhopdopsin 7-helix transmembrane proteins Gene3D
1.20.1070.10.2
1.20.1070.10.2.1
1.20.1070.10.2.1.1
1.20.1070.10.2.1.1.1
1.20.1070.10.2.1.1.1.1

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Segment boundaries for domain 2jafA00

Chopping figure for domain 2jafA00
DomainStart PDB ResidueStop PDB Residue
2jafA00 22 263

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 1.20.1070.10.2.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1c8rA00 90.19 BacteriorhodopsinHalobacterium salinarumBacteriorhodopsin 1.20.1070.10 222 33 90 1.60 1.76
1h2sA00 89.52 Natronomonas pharaonisProtein bindingSensory rhodopsin-2 1.20.1070.10 225 25 92 1.87 2.03
1xioA00 89.19 Nostoc sp. PCC 7120BacteriorhodopsinBacteriorhodopsin 1.20.1070.10 217 25 87 1.71 1.96
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2jafA00
AVRENALLSSSLWVNVALAGIAILVFVYMGRTIRPGRPRLIWGATLMIPLVSISSYLGLLSGLTVGMIEMPAGHALAGEM
VRSQWGRYLTWALSTPMILLALGLLADVDLGSLFTVIAADIGMCVTGLAAAMTTSALLFRWAFYAISCAFFVVVLSALVT
DWAASASSAGTAEIFDTLRVLVVVLWLGYPIVWAVGVEGLALVQSVGATSWAYSVLDVFAKYVFAFILLRWVANNERTVA
VA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2jafA00
AVRENALLSSSLWVNVALAGIAILVFVYMGRTIRPGRPRLIWGATLMIPLVSISSYLGLLSGLTVGMIEMPAGHALAGEM
VRSQWGRYLTWALSTPMILLALGLLADVDLGSLFTVIAADIGMCVTGLAAAMTTSALLFRWAFYAISCAFFVVVLSALVT
DWAASASSAGTAEIFDTLRVLVVVLWLGYPIVWAVGVEGLALVQSVGATSWAYSVLDVFAKYVFAFILLRWVANNERTVA
VAGQTLGTMSSDD
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 12 Jan 2007 03:44

Assigning to "1.20.1070.10" based on similarity with "1e12A00"

Flow stage update by auto on 12 Jan 2007 03:35

No in_process hits for Domain "2jafA00" ready to be processed

Flow stage update by auto on 12 Jan 2007 03:34

NW result present for Domain "2jafA00"

Flow stage update by auto on 09 Jan 2007 15:38

All required files are present for Domain "2jafA00"

Flow stage update by auto on 08 Jan 2007 20:16

Beginning processing for Domain "2jafA00"

Insertion by auto on 08 Jan 2007 20:05

Final ChopClose added based on similarity with "1e12A"