CATH Domain: 2j23A00 XML data for domain: 2j23A00

Molscript image for 2j23A00
2j23A00
PDB coordinates for domain 2j23A00

PDB 2j23, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.30 Glutaredoxin
3.40.30.10 Glutaredoxin Gene3D
3.40.30.10.7
3.40.30.10.7.1
3.40.30.10.7.1.1
3.40.30.10.7.1.1.1
3.40.30.10.7.1.1.1.1

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Segment boundaries for domain 2j23A00

Chopping figure for domain 2j23A00
DomainStart PDB ResidueStop PDB Residue
2j23A00 -8 106

Structural Neighbourhood (36 entries)

There are 36 matching structural neighberhood comparisons for CATH ID 3.40.30.10.7.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 36 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2vimA00 91.77 Fasciola hepaticaThioredoxin (TRX) 3.40.30.10 104 36 88 1.14 1.29
1gh2A00 91.14 CytoplasmHomo sapiensThioredoxin-like protein 1Disulfide oxidoreductase activity 3.40.30.10 107 33 91 1.21 1.33
2pu9C00 90.75 Thioredoxin F-type, chloroplasticSpinacia oleraceaProtein binding 3.40.30.10 111 35 93 3.41 3.63
1r26A00 90.43 Trypanosoma brucei bruceiThioredoxin 3.40.30.10 113 31 97 4.83 4.96
1w4vA00 90.17 Thioredoxin, mitochondrialHomo sapiensThioredoxin 1 3.40.30.10 110 32 93 2.21 2.35
1thxA00 89.50 Nostoc sp. PCC 7120Thioredoxin-2 3.40.30.10 108 23 92 1.60 1.74
2e0qA00 89.43 Sulfolobus tokodaii140aa long hypothetical thioredoxinThioredoxin 1 3.40.30.10 104 31 88 1.60 1.80
3gnjA00 88.96 Desulfitobacterium hafniense DCB-2Thioredoxin domain protein 3.40.30.10 107 22 90 3.30 3.65
1v98A00 87.43 Thermus thermophilus HB8Thioredoxin 2 [EC:1.8.1.8]Thioredoxin 3.40.30.10 92 32 77 1.74 2.25
2dizA00 87.14 Anti-apoptosisHomo sapiensThioredoxin domain-containing protein 5 3.40.30.10 117 22 94 4.30 4.53
2f51A00 84.77 Trichomonas vaginalisThioredoxin 1Thioredoxin 3.40.30.10 101 31 84 2.14 2.54
2c0gA01 83.80 Protein targeting to GolgiRegulation of multicellular organism growthProtein homodimerization activityEmbryo development ending in birth or egg hatchingDrosophila melanogaster 3.40.30.10 122 12 85 2.81 3.30
1wouA00 83.33 Thioredoxin domain-containing protein 17Tumor necrosis factor-mediated signaling pathwayProtein bindingCytosolProtein-disulfide reductase activity 3.40.30.10 119 13 82 2.59 3.15
1qgvA00 83.33 SpliceosomeSpliceosomal complexU5 snRNP protein, DIM1 familyHomo sapiensProtein binding 3.40.30.10 130 19 82 2.36 2.87
2av4A00 83.27 SpliceosomeU5 snRNP protein, DIM1 familyPlasmodium yoelii yoeliiDrosophila melanogaster RE13747p 3.40.30.10 135 13 79 3.45 4.35
1a8yA02 82.79 Calsequestrin-1Oryctolagus cuniculus 3.40.30.10 102 9 84 2.69 3.19
1a8yA01 82.79 Calsequestrin-1Oryctolagus cuniculus 3.40.30.10 124 14 91 3.47 3.77
3gixA00 82.77 Thioredoxin-like protein 4BHomo sapiens 3.40.30.10 133 20 77 2.34 3.02
1bjxA00 82.73 Cell surfaceProtein disulfide isomerase activityER-Golgi intermediate compartmentProtein bindingPeptidyl-proline hydroxylation to 4-hydroxy-L-proline 3.40.30.10 110 12 84 2.88 3.41
2in3A01 81.27 Nitrosomonas europaeaPutative protein-disulfide isomerasePutative uncharacterized protein 3.40.30.10 78 15 64 1.85 2.88
2kucA00 80.92 Bacteroides thetaiotaomicronPutative disulphide-isomerase 3.40.30.10 121 21 91 3.60 3.92
1sjiA03 80.22 Canis lupus familiarisCalsequestrin-2 3.40.30.10 123 6 85 2.88 3.37
1h75A00 78.61 Glutaredoxin-like protein NrdHGlutaredoxin-like protein nrdHEscherichia coli K-12 3.40.30.10 76 15 62 2.16 3.45
1ttzA00 77.78 Xanthomonas campestris pv. campestrisPutative uncharacterized protein 3.40.30.10 74 10 62 2.89 4.62
2qsiA01 77.69 Putative hydrogenase expression/formation protein hupGHydrogenase-1 operon protein HyaERhodopseudomonas palustris 3.40.30.10 82 9 69 2.64 3.79
1g7eA00 76.59 Rattus norvegicusEndoplasmic reticulum lumenEndoplasmic reticulum protein 29Transport vesicleEndoplasmic reticulum resident protein 29 3.40.30.10 122 13 83 3.49 4.17
2okaA00 76.02 Pseudomonas aeruginosaSelenoprotein W-related proteinPutative uncharacterized protein 3.40.30.10 84 7 63 2.74 4.32
3f9uA00 75.71 Bacteroides fragilis NCTC 9343Putative exported cytochrome C biogenesis-related protein 3.40.30.10 139 14 73 3.57 4.87
2p0gB00 75.61 Vibrio choleraeSelenoprotein W-related proteinSelenoprotein W-related protein 3.40.30.10 79 5 62 2.74 4.38
1t1vA00 75.44 Mus musculusSH3 domain-binding glutamic acid-rich-like protein 3 3.40.30.10 93 8 64 2.69 4.18
2fa8B00 75.34 Agrobacterium tumefaciens str. C58Selenoprotein W-related proteinPutative uncharacterized protein 3.40.30.10 86 9 62 2.79 4.46
1m2dA00 75.03 Ferredoxin, 2Fe-2SAquifex aeolicus 3.40.30.10 101 6 66 3.26 4.87
1nm3A02 74.73 Peroxiredoxin (alkyl hydroperoxide reductase subunit C) [EC:1.11.1.15]Haemophilus influenzaeHybrid peroxiredoxin hyPrx5 3.40.30.10 70 14 58 2.85 4.89
1iloA00 74.40 Methanothermobacter thermautotrophicus str. Delta HConserved protein 3.40.30.10 77 11 64 3.07 4.77
1abaA00 74.28 Enterobacteria phage T4Glutaredoxin 3.40.30.10 87 12 60 2.94 4.90
1u6tA00 73.04 CytoplasmSH3 domain-binding glutamic acid-rich-like proteinNucleusHomo sapiensSH3/SH2 adaptor activity 3.40.30.10 120 7 60 2.91 4.78
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Displaying entries 1 to 36 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2j23A00
HHHHLVPRGSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGI
RAMPTFVFFKNGQKIDTVVGADPSKLQAAITQHSA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2j23A00
MRGSHHHHHHLVPRGSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQI
AQEVGIRAMPTFVFFKNGQKIDTVVGADPSKLQAAITQHSA
BLAST against CATH

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Domain History Events (10)

Domain assigned by auto on 27 Apr 2009 14:50

Assigning to "3.40.30.10" based on similarity with "2j23B00"

Flow stage update by auto on 27 Apr 2009 14:49

No in_process hits for Domain "2j23A00" ready to be processed

Update comment by auto on 27 Apr 2009 14:43

Domain "2j23A00" hits Domain "2hsyA00" (43.2692307692308% over 85.9504132231405%) which is currently in process

Update comment by auto on 27 Apr 2009 14:32

Domain "2j23A00" hits Domain "2fa4A00" (46.8468468468468% over 91.7355371900826%) which is currently in process

Update comment by auto on 27 Apr 2009 14:24

Domain "2j23A00" hits Domain "2j23B00" (100% over 100%) which is currently in process

Flow stage update by auto on 27 Apr 2009 14:08

Domain "2j23A00" hits Domain "2j23B00" (100% over 100%) which is currently in process

Flow stage update by auto on 27 Apr 2009 14:08

NW result present for Domain "2j23A00"

Flow stage update by auto on 25 Apr 2009 08:08

All required files are present for Domain "2j23A00"

Flow stage update by auto on 24 Apr 2009 02:31

Beginning processing for Domain "2j23A00"

Insertion by auto on 23 Apr 2009 21:25

Final ChopClose added based on similarity with "2j23B"