CATH Domain: 2itbB00

2itbB00

PDB 2itb, Chain B, Domain 0

CATH Code	Level Description	Links
1	Mainly Alpha
1.20	Up-down Bundle
1.20.1260	Ferritin;
1.20.1260.10		Gene3D
1.20.1260.10.25
1.20.1260.10.25.1
1.20.1260.10.25.1.1
1.20.1260.10.25.1.1.1
1.20.1260.10.25.1.1.1.1

Structure
Sequence
History

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Segment boundaries for domain 2itbB00

Domain	Start PDB Residue	Stop PDB Residue
2itbB00	4	201

What is a Structural Neighbour?

The term "structural neighbour" is used here to describe two CATH domains that share a degree of structural similarity. The SSAP algorithm is used to calculate this similarity and works by generating a structure-based pairwise alignment of the two domains then scoring this alignment using a RMSD score which has been normalised by the length of the larger domain divided by the number of aligned residues (SIMAX).

Structural Neighbourhood (1 entries)

There are 1 matching structural neighberhood comparisons for CATH ID 1.20.1260.10.25.1.1.1.1 (SIMAX score < 5)

Match Depth	Match	SSAP score	Match Keywords	Match Superfamily	Length	Sequence Id	Overlap	RMSD	SIMAX
	1rcwB00	75.85	Chlamydia trachomatisPqqC-like proteinPyrroloquinoline-quinone synthase [EC:1.3.3.11]	1.20.910.10	210	8	84	4.17	4.95

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Domain ATOM Sequence

>pdb|2itbB00
IPEIDAFLGCPTPDAWIEAALADQETLLIDHKNCEFKAASTALSLIAKYNTHLDLINSRLAREELVHHEQVLRLKRRGVP
LRPVSAGRYASGLRRLVRAHEPVKLVDTLVVGAFIEARSCERFAALVPHLDEELGRFYHGLLKSEARHYQGYLKLAHNYG
DEADIARCVELVRAAEELIQSPDQELRFHSGIPQ

BLAST against CATH

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Domain COMBS Sequence

>pdb|2itbB00
GXSLIPEIDAFLGCPTPDAWIEAALADQETLLIDHKNCEFKAASTALSLIAKYNTHLDLINXXSRLAREELVHHEQVLRL
XKRRGVPLRPVSAGRYASGLRRLVRAHEPVKLVDTLVVGAFIEARSCERFAALVPHLDEELGRFYHGLLKSEARHYQGYL
KLAHNYGDEADIARCVELVRAAEXELIQSPDQELRFHSGIPQALAA

BLAST against CATH

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Domain History Events (12)

Domain assigned by auto on 14 Feb 2008 11:53

Assigning to "1.20.1260.10" based on similarity with "2itbA00"