CATH Domain: 2ikbB00

2ikbB00

PDB 2ikb, Chain B, Domain 0

CATH Code	Level Description	Links
1	Mainly Alpha
1.20	Up-down Bundle
1.20.141	Chitosanase, subunit A; domain 1
1.20.141.10	Chitosanase, subunit A, domain 1	Gene3D
1.20.141.10.1
1.20.141.10.1.1
1.20.141.10.1.1.1
1.20.141.10.1.1.1.1
1.20.141.10.1.1.1.1.1

Structure
Sequence
History

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Segment boundaries for domain 2ikbB00

Domain	Start PDB Residue	Stop PDB Residue
2ikbB00	3	163

What is a Structural Neighbour?

The term "structural neighbour" is used here to describe two CATH domains that share a degree of structural similarity. The SSAP algorithm is used to calculate this similarity and works by generating a structure-based pairwise alignment of the two domains then scoring this alignment using a RMSD score which has been normalised by the length of the larger domain divided by the number of aligned residues (SIMAX).

Structural Neighbourhood (0 entries)

Sorry, we could not find any non-redundant representatives with similar structural scores to this domain in CATH.

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Domain ATOM Sequence

>pdb|2ikbB00
DKFNQFINRVLSHEGGYANHPKDPGGETNWGITKRTAQANGYNGSRATREQAISIYRKAFWERYRADQPEAVAFQFFDAC
VNHGYGNAARLQRAAGVPDDGVIGAVSLKAINSLPENDLLLRFNAERLVFYTKLKGWVRRVAQNLIHASA

BLAST against CATH

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Domain COMBS Sequence

>pdb|2ikbB00
XSDKFNQFINRVLSHEGGYANHPKDPGGETNWGITKRTAQANGYNGSXRAXTREQAISIYRKAFWERYRADQXPEAVAFQ
FFDACVNHGYGNAARXLQRAAGVPDDGVIGAVSLKAINSLPENDLLLRFNAERLVFYTKLGTFTSFGKGWVRRVAQNLIH
ASADNTD

BLAST against CATH

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Domain History Events (14)

Domain assigned by auto on 10 Apr 2008 15:49

Assigning to "1.20.141.10" based on similarity with "2ikbA00"

Flow stage update by auto on 10 Apr 2008 15:35

No in_process hits for Domain "2ikbB00" ready to be processed

Update comment by auto on 10 Apr 2008 15:21

Domain "2ikbB00" hits Domain "2ikbA00" (97.0059880239521% over 100%) which is currently in process