CATH Domain: 2i7hA00

2i7hA00

PDB 2i7h, Chain A, Domain 0

CATH Code	Level Description	Links
3	Alpha Beta
3.40	3-Layer(aba) Sandwich
3.40.109	NADH Oxidase
3.40.109.10	NADH Oxidase	Gene3D
3.40.109.10.12
3.40.109.10.12.1
3.40.109.10.12.1.1
3.40.109.10.12.1.1.1
3.40.109.10.12.1.1.1.1

Structure
Sequence
History

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Segment boundaries for domain 2i7hA00

Domain	Start PDB Residue	Stop PDB Residue
2i7hA00	0	186

What is a Structural Neighbour?

The term "structural neighbour" is used here to describe two CATH domains that share a degree of structural similarity. The SSAP algorithm is used to calculate this similarity and works by generating a structure-based pairwise alignment of the two domains then scoring this alignment using a RMSD score which has been normalised by the length of the larger domain divided by the number of aligned residues (SIMAX).

Structural Neighbourhood (1 entries)

There are 1 matching structural neighberhood comparisons for CATH ID 3.40.109.10.12.1.1.1.1 (SIMAX score < 5)

Match Depth	Match	SSAP score	Match Keywords	Match Superfamily	Length	Sequence Id	Overlap	RMSD	SIMAX
	1vkwA01	75.64	Thermotoga maritimaPutative uncharacterized protein	3.40.109.10	118	15	60	2.98	4.91

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Domain ATOM Sequence

>pdb|2i7hA00
ATTYTSIANVIKERRSVRTFTDKAVEKDLLIELLNDATWAPNHKHREPWNCKLYIGEGRKKLVDAVLNSFTEEERAKRGK
ILSDRFLSTPAQIVVYNEDPRQIQRDEDYAATCAFQNFQLLAWERGLGCVWKSGGLNYNPLFIEGIGLTRGQRIVGILHI
GYFDKAPEGKARTPITEKEIIEG

BLAST against CATH

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Domain COMBS Sequence

>pdb|2i7hA00
SNAXTTYTSIANVIKERRSVRTFTDKAVEKDLLIELLNDATWAPNHKHREPWNCKLYIGEGRKKLVDAVLNSFTEEERAK
RGKILSDRFLSTPAQIVVYXNEDPRQIQRDEDYAATCAFXQNFQLLAWERGLGCVWKSGGLNYNPLFIEGIGLTRGQRIV
GILHIGYFDKAPEGKARTPITEKXEIIEG

BLAST against CATH

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Domain History Events (12)

Domain assigned by auto on 11 Feb 2008 14:14

Assigning to "3.40.109.10" based on similarity with "2i7hF00"