Domain assigned by cuff on 11 Feb 2008 15:04
def homology
| CATH Code | Level Description | Links |
|---|---|---|
3
| Alpha Beta | |
3.40
| 3-Layer(aba) Sandwich | |
3.40.630
| Aminopeptidase | |
3.40.630.30
| Gene3D | |
3.40.630.30.2
| ||
3.40.630.30.2.1
| ||
3.40.630.30.2.1.1
| ||
3.40.630.30.2.1.1.1
| ||
3.40.630.30.2.1.1.1.1
|
There are 56 matching structural neighberhood comparisons for CATH ID 3.40.630.30.2.1.1.1.1 (SIMAX score < 5)
>pdb|2i6cA00 QLSHRPAETGDLETVAGFPQDRDELFYCYPKAIWPFSVAQLAAAIAERRGSTVAVHDGQVLGFANFYQWQHGDFCALGNV APAARGLGVARYLIGVENLAREQYKARLKISCFNANAAGLLLYTQLGYQPRAIAERHDPDGRRVALIQDKPLEP
def homology
excellent scores. SCOP suggests same family
Adding scan of type "DOMAIN_SCAN_PRC_PFAMCATH" with 166 results for 2i6cA00
SSAP: 85.26 OV: 91 SEQ: 21. Similar linkage. 2ae6A00 should possible be asssign to the same homology family as the query. (SSAP= 83, Seq= 15, OV= 87. Similar linkage. Same function, Acetyl transferase - gnt family.)
SSAP: 85.26 OV: 91 SEQ: 21. Similar linkage. 2ae6A00 should possible be asssign to the same homology family as the query. (SSAP= 83, Seq= 15, OV= 87. Similar linkage. Same function, Acetyl transferase - gnt family.)
SSAP: 85.26 OV: 91 SEQ: 21. Similar linkage. 2ae6A00 should possible be asssign to the same homology family as the query. (SSAP= 83, Seq= 15, OV= 87. Similar linkage. Same function, Acetyl transferase - gnt family.)
SSAP= 83, Seq= 15, OV= 87. Similar linkage. Same function. (Acetyl transferase - gnt family)
User 'tronnberg' has allocated a domain to themselves for HomChecking with comment : Grabbed this domain via HomCheck's "Get Me A Domain" button.
User 'tronnberg' has allocated a domain to themselves for HomChecking with comment : Grabbed this domain via HomCheck's "Get Me A Domain" button.
Domain "2i6cA00" SCOP scan with no results - no SCOP mapping
Adding scan of type "DOMAIN_SCAN_SCOP_CATH" with 0 results for 2i6cA00
Retrieved PRC_PFAMCATH results for job ID SID0304214688919616 and chopping inserted.
PRC_PFAMCATH job SID0304214688919616 is not yet finished.
The entry "2i6cA00" has been submitted to the PRC_PFAMCATH webservice.
The entry "2i6cA00" has been submitted to the PRC_PFAMCATH webservice.
Retrieved SSAP results for job ID SID9374237278255488 and chopping inserted.
Adding scan of type "DOMAIN_SCAN_SSAP_CATH" with 451 results for 2i6cA00
SSAP job SID9374237278255488 is not yet finished.
The entry "2i6cA00" has been submitted to the SSAP webservice.
The entry "2i6cA00" has been submitted to the SSAP webservice.
Retrieved PRC results for job ID SID4424187791992456 and inserted them into the database.
Adding scan of type "DOMAIN_SCAN_PRC_CATH" with 39 results for 2i6cA00
The entry "2i6cA00" has been submitted to the PRC webservice.
The entry "2i6cA00" has been submitted to the PRC webservice.
Retrieved HMM(SAM) results for job ID SID0702881893140368 and inserted them into the database.
Adding scan of type "DOMAIN_SCAN_SAM_CATH" with 30 results for 2i6cA00
HMM(SAM) job SID0702881893140368 is not yet finished.
The entry "2i6cA00" has been submitted to the HMM (SAM) webservice.
The entry "2i6cA00" has been submitted to the HMM (SAM) webservice.
Retrieved "2i6cA00" CATHEDRAL results for job ID SID6040922635343176 and inserted them into the database.
Adding scan of type "DOMAIN_SCAN_CATHEDRAL_CATH" with 31 results for 2i6cA00
The entry "2i6cA00" has been submitted to the CATHEDRAL webservice.
The entry "2i6cA00" has been submitted to the CATHEDRAL webservice.
ScanList with 8763 domains written to "/cath/data/current/scanlists/cathdb_current.fletcher/2i6cA00.scanlist" for "2i6cA00"
Writing ScanList containing 8763 domains to file "/cath/data/current/scanlists/cathdb_current.fletcher/2i6cA00.scanlist" for domain "2i6cA00"
No satisfactory AssignClose result found.
No in_process hits for Domain "2i6cA00" ready to be processed
NW result present for Domain "2i6cA00"
All required files are present for Domain "2i6cA00"
Beginning processing for Domain "2i6cA00"
good chopping