CATH Domain: 2i6cA00 XML data for domain: 2i6cA00

Molscript image for 2i6cA00
2i6cA00
PDB coordinates for domain 2i6cA00

PDB 2i6c, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.630 Aminopeptidase
3.40.630.30 Gene3D
3.40.630.30.2
3.40.630.30.2.1
3.40.630.30.2.1.1
3.40.630.30.2.1.1.1
3.40.630.30.2.1.1.1.1

Segment boundaries for domain 2i6cA00

Chopping figure for domain 2i6cA00
DomainStart PDB ResidueStop PDB Residue
2i6cA00 1002 1160

Structural Neighbourhood (56 entries)

There are 56 matching structural neighberhood comparisons for CATH ID 3.40.630.30.2.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 56 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1vhsB00 85.91 Bacillus subtilisPhosphinothricin acetyltransferase [EC:2.3.1.183]Phosphonate and phosphinate metabolismPutative phosphinothricin acetyltransferase ywnH 3.40.630.30 155 21 92 2.49 2.70
2fiwA00 85.53 Putative acetyltransferase [EC:2.3.1.-]GCN5-related N-acetyltransferase:Aminotransferase, class-IIRhodopseudomonas palustris 3.40.630.30 156 18 90 3.72 4.12
3fncA00 85.21 Listeria innocuaLin0611 protein 3.40.630.30 157 16 92 3.67 3.95
3eo4A00 85.18 Methanocaldococcus jannaschiiUncharacterized protein MJ1062 3.40.630.30 155 12 89 2.49 2.78
1tiqB00 85.06 Bacillus subtilisProtease synthase and sporulation negative regulatory protein PAI 1 3.40.630.30 161 10 89 3.02 3.38
3k9uA00 84.97 Putative uncharacterized protein Ta0374Thermoplasma acidophilum 3.40.630.30 159 14 88 3.25 3.69
2fiaA00 84.18 Acetyltransferase, GNAT familyEnterococcus faecalis 3.40.630.30 157 16 92 3.32 3.57
2r7hB00 83.90 Desulfovibrio desulfuricans subsp. desulfuricans str. G20Putative uncharacterized protein 3.40.630.30 157 15 89 2.90 3.23
3exnA00 83.85 Tyrosine metabolismLimonene and pinene degradation1- and 2-Methylnaphthalene degradationPhenylalanine metabolismBenzoate degradation via CoA ligation 3.40.630.30 151 11 86 2.43 2.81
2ge3B00 83.69 Agrobacterium tumefaciens str. C58Probable acetyltransferase 3.40.630.30 159 17 89 2.94 3.27
1s3zA00 83.57 Salmonella enterica subsp. enterica serovar EnteritidisAminoglycoside 6'-N-acetyltransferase 3.40.630.30 147 18 84 4.13 4.89
2ae6A00 83.45 Acetyltransferase, GNAT familyEnterococcus faecalis 3.40.630.30 144 15 87 3.62 4.16
3blnA00 83.32 Bacillus cereus ATCC 10987Putative uncharacterized protein 3.40.630.30 139 16 86 3.01 3.49
2i79D00 83.19 Acetyltransferase, GNAT familyStreptococcus pneumoniae 3.40.630.30 167 13 88 3.30 3.72
3g8wA00 82.86 Staphylococcus epidermidis ATCC 12228Lactococcal prophage ps3 protein 05 3.40.630.30 158 12 92 3.29 3.56
1mk4A00 82.84 Bacillus subtilisUncharacterized protein yqjY 3.40.630.30 157 14 85 2.80 3.28
3d8pB00 82.63 Staphylococcus aureus subsp. aureus Mu50Putative uncharacterized protein 3.40.630.30 157 9 85 3.42 4.01
3fbuA00 82.54 Bacillus anthracisAcetyltransferase, GNAT family 3.40.630.30 166 13 90 2.74 3.03
1qsmD00 81.84 CytoplasmIdentical protein bindingSaccharomyces cerevisiaeHistone acetyltransferase activityHistone acetyltransferase HPA2 3.40.630.30 152 14 86 3.53 4.09
2ozgA01 81.67 Anabaena variabilis ATCC 29413GCN5-related N-acetyltransferase 3.40.630.30 117 15 72 2.57 3.57
1n71B00 81.67 Aac(6')-Ii proteinEnterococcus faecium 3.40.630.30 179 12 80 3.00 3.73
1gheA00 81.56 Tyrosine metabolismLimonene and pinene degradationAcetyltransferase1- and 2-Methylnaphthalene degradationPhenylalanine metabolism 3.40.630.30 166 20 88 3.11 3.51
1cjwA00 81.34 Ovis ariesSerotonin N-acetyltransferase 3.40.630.30 166 12 82 3.01 3.65
2pdoA01 81.27 Shigella flexneriAcetyltransferase ypeA 3.40.630.30 118 23 74 3.01 4.07
1yreC00 81.24 Pseudomonas aeruginosaPutative uncharacterized protein 3.40.630.30 182 17 81 3.15 3.85
2pc1A00 81.11 Acetyltransferase, GNAT familyStreptococcus agalactiae serogroup V 3.40.630.30 158 12 86 3.97 4.58
2fckA00 80.96 Vibrio choleraeRibosomal-protein-serine acetyltransferase, putative 3.40.630.30 171 14 85 3.81 4.46
3f5bA00 80.89 Aminoglycoside N(6')acetyltransferaseLegionella pneumophila subsp. pneumophila str. Philadelphia 1 3.40.630.30 163 9 84 3.44 4.09
3fb3A00 80.83 Amino sugar and nucleotide sugar metabolismGlucosamine-phosphate N-acetyltransferase [EC:2.3.1.4]N-acetyltransferase, putativeTrypanosoma brucei 3.40.630.30 141 17 78 3.21 4.09
3efaA00 80.74 Tyrosine metabolismBenzoate degradation via CoA ligationLactobacillus plantarumAcetyltransferase (Putative)Limonene and pinene degradation 3.40.630.30 141 12 83 3.14 3.75
1sqhA02 80.71 Drosophila melanogasterCG14615 3.40.630.30 128 16 72 3.01 4.18
2i00C01 80.59 Acetyltransferase, GNAT familyEnterococcus faecalis 3.40.630.30 144 11 81 3.49 4.27
1q2yA00 80.50 Bacillus subtilisUncharacterized N-acetyltransferase yjcF 3.40.630.30 140 12 84 3.30 3.91
2qecA00 80.22 Corynebacterium glutamicumGCN5-related N-acetyltransferase 3.40.630.30 175 16 80 3.96 4.91
1y9kA01 80.20 Tyrosine metabolismLimonene and pinene degradationIAA acetyltransferaseBacillus cereus ATCC 145791- and 2-Methylnaphthalene degradation 3.40.630.30 110 20 70 3.35 4.78
2fsrA00 80.11 Agrobacterium tumefaciens str. C58Acetyltranferase 3.40.630.30 168 11 82 3.72 4.53
1xebA00 79.77 Pseudomonas aeruginosaElaA proteinPutative uncharacterized protein 3.40.630.30 146 13 87 4.11 4.72
2dxqA00 79.60 Agrobacterium tumefaciens str. C58Acetyltransferase 3.40.630.30 145 15 82 2.91 3.53
3d3sA00 79.57 L-2,4-diaminobutyric acid acetyltransferaseGlycine, serine and threonine metabolismBordetella parapertussisL-2,4-diaminobutyric acid acetyltransferase [EC:2.3.1.178]Metabolic pathways 3.40.630.30 157 14 92 3.42 3.70
1nslA00 79.36 Bacillus subtilisPutative ribosomal N-acetyltransferase ydaF 3.40.630.30 173 12 84 3.42 4.05
1y9wA01 79.30 AcetyltransferaseBacillus cereus ATCC 14579 3.40.630.30 104 20 62 2.64 4.19
1qstA00 78.81 HAT A1Tetrahymena thermophila 3.40.630.30 160 10 81 3.37 4.12
2r1iA01 78.74 Arthrobacter sp. FB24GCN5-related N-acetyltransferase 3.40.630.30 129 16 73 2.84 3.87
1y7rA00 78.66 Staphylococcus aureus subsp. aureus Mu50Putative uncharacterized protein 3.40.630.30 125 7 77 3.35 4.34
1bo4A00 78.49 Aminoglycoside-(3)-N-acetyltransferaseSerratia marcescens 3.40.630.30 136 11 75 3.61 4.75
2qmlA00 78.42 BH2621 proteinBacillus halodurans 3.40.630.30 184 11 77 3.49 4.49
2fl4A02 78.42 Arginine and proline metabolismSpermine/spermidine acetyltransferase, putativeDiamine N-acetyltransferase [EC:2.3.1.57]Metabolic pathwaysEnterococcus faecalis 3.40.630.30 104 15 64 2.86 4.45
2oh1C00 78.15 Listeria monocytogenes serotype 4b str. F2365Acetyltransferase, GNAT family 3.40.630.30 166 11 78 3.78 4.83
2ozhA01 77.78 Xanthomonas campestris pv. campestrisPutative uncharacterized protein 3.40.630.30 120 15 72 3.18 4.41
3dnsA00 77.43 Ribosomal-protein-alanine N-acetyltransferase [EC:2.3.1.128]Clostridium acetobutylicumRibosomal-protein-alanine acetyltransferase (Acetylating enzyme for N-terminal of ribosomal protein S5) 3.40.630.30 126 8 75 3.66 4.86
2hqyA02 76.99 Hypothetical proteinBacteroides thetaiotaomicronPutative uncharacterized protein 3.40.630.30 164 5 76 3.59 4.71
3gkrA02 76.92 Weissella viridescensFemX 3.40.630.30 165 4 70 3.02 4.26
2hv2A03 76.79 Enterococcus faecalisPutative uncharacterized protein 3.40.630.30 148 6 74 3.41 4.57
3ey5A01 75.98 Acetyltransferase-like, GNAT familyBacteroides thetaiotaomicron 3.40.630.30 144 8 74 3.58 4.79
1lrzA02 75.97 Peptidoglycan biosynthesisMetabolic pathwaysPeptidoglycan pentaglycine glycine transferase (the second and third glycine) [EC:2.3.2.-]Aminoacyltransferase femAStaphylococcus aureus 3.40.630.30 195 6 58 2.73 4.63
1lrzA01 75.91 Peptidoglycan biosynthesisMetabolic pathwaysPeptidoglycan pentaglycine glycine transferase (the second and third glycine) [EC:2.3.2.-]Aminoacyltransferase femAStaphylococcus aureus 3.40.630.30 143 8 79 3.95 4.99
Displaying entries 1 to 56 (page 1 of 1)


Domain ATOM Sequence

>pdb|2i6cA00
QLSHRPAETGDLETVAGFPQDRDELFYCYPKAIWPFSVAQLAAAIAERRGSTVAVHDGQVLGFANFYQWQHGDFCALGNV
APAARGLGVARYLIGVENLAREQYKARLKISCFNANAAGLLLYTQLGYQPRAIAERHDPDGRRVALIQDKPLEP    

Domain COMBS Sequence

>pdb|2i6cA00
XQLSHRPAETGDLETVAGFPQDRDELFYCYPKAIWPFSVAQLAAAIAERRGSTVAVHDGQVLGFANFYQWQHGDFCALGN
XXVAPAARGLGVARYLIGVXENLAREQYKARLXKISCFNANAAGLLLYTQLGYQPRAIAERHDPDGRRVALIQXDKPLEP    

Domain History Events (41)

Domain assigned by cuff on 11 Feb 2008 15:04

def homology

Domain assignment manual match h by cuff on 11 Feb 2008 15:03

excellent scores. SCOP suggests same family

Domain scan prc pfamcath by auto on 25 Sep 2007 10:44

Adding scan of type "DOMAIN_SCAN_PRC_PFAMCATH" with 166 results for 2i6cA00

Domain assignment manual match t by tronnberg on 05 Sep 2007 11:13

SSAP: 85.26 OV: 91 SEQ: 21. Similar linkage. 2ae6A00 should possible be asssign to the same homology family as the query. (SSAP= 83, Seq= 15, OV= 87. Similar linkage. Same function, Acetyl transferase - gnt family.)

Homcheck review by tronnberg on 05 Sep 2007 11:13

SSAP: 85.26 OV: 91 SEQ: 21. Similar linkage. 2ae6A00 should possible be asssign to the same homology family as the query. (SSAP= 83, Seq= 15, OV= 87. Similar linkage. Same function, Acetyl transferase - gnt family.)

Flow stage update by tronnberg on 05 Sep 2007 11:13

SSAP: 85.26 OV: 91 SEQ: 21. Similar linkage. 2ae6A00 should possible be asssign to the same homology family as the query. (SSAP= 83, Seq= 15, OV= 87. Similar linkage. Same function, Acetyl transferase - gnt family.)

Domain assignment manual match h by tronnberg on 22 Aug 2007 16:19

SSAP= 83, Seq= 15, OV= 87. Similar linkage. Same function. (Acetyl transferase - gnt family)

Homcheck allotment by tronnberg on 22 Aug 2007 16:14

User 'tronnberg' has allocated a domain to themselves for HomChecking with comment : Grabbed this domain via HomCheck's "Get Me A Domain" button.

Flow stage update by tronnberg on 22 Aug 2007 16:14

User 'tronnberg' has allocated a domain to themselves for HomChecking with comment : Grabbed this domain via HomCheck's "Get Me A Domain" button.

Flow stage update by auto on 25 May 2007 10:28

Domain "2i6cA00" SCOP scan with no results - no SCOP mapping

Domain scan scop cath by auto on 25 May 2007 10:27

Adding scan of type "DOMAIN_SCAN_SCOP_CATH" with 0 results for 2i6cA00

Flow stage update by auto on 25 May 2007 10:20

Retrieved PRC_PFAMCATH results for job ID SID0304214688919616 and chopping inserted.

Update comment by auto on 25 May 2007 06:16

PRC_PFAMCATH job SID0304214688919616 is not yet finished.

Prc pfamcath submit by auto on 25 May 2007 06:13

The entry "2i6cA00" has been submitted to the PRC_PFAMCATH webservice.

Flow stage update by auto on 25 May 2007 06:13

The entry "2i6cA00" has been submitted to the PRC_PFAMCATH webservice.

Flow stage update by auto on 25 May 2007 06:13

Retrieved SSAP results for job ID SID9374237278255488 and chopping inserted.

Domain scan ssap cath by auto on 25 May 2007 06:12

Adding scan of type "DOMAIN_SCAN_SSAP_CATH" with 451 results for 2i6cA00

Update comment by auto on 24 May 2007 08:13

SSAP job SID9374237278255488 is not yet finished.

Ssap cath submit by auto on 24 May 2007 07:59

The entry "2i6cA00" has been submitted to the SSAP webservice.

Flow stage update by auto on 24 May 2007 07:59

The entry "2i6cA00" has been submitted to the SSAP webservice.

Flow stage update by auto on 24 May 2007 07:50

Retrieved PRC results for job ID SID4424187791992456 and inserted them into the database.

Domain scan prc cath by auto on 24 May 2007 07:49

Adding scan of type "DOMAIN_SCAN_PRC_CATH" with 39 results for 2i6cA00

Prc cath submit by auto on 24 May 2007 07:14

The entry "2i6cA00" has been submitted to the PRC webservice.

Flow stage update by auto on 24 May 2007 07:14

The entry "2i6cA00" has been submitted to the PRC webservice.

Flow stage update by auto on 24 May 2007 07:03

Retrieved HMM(SAM) results for job ID SID0702881893140368 and inserted them into the database.

Domain scan sam cath by auto on 24 May 2007 07:02

Adding scan of type "DOMAIN_SCAN_SAM_CATH" with 30 results for 2i6cA00

Update comment by auto on 24 May 2007 03:35

HMM(SAM) job SID0702881893140368 is not yet finished.

Flow stage update by auto on 24 May 2007 03:29

The entry "2i6cA00" has been submitted to the HMM (SAM) webservice.

Sam cath submit by auto on 24 May 2007 03:29

The entry "2i6cA00" has been submitted to the HMM (SAM) webservice.

Flow stage update by auto on 24 May 2007 03:18

Retrieved "2i6cA00" CATHEDRAL results for job ID SID6040922635343176 and inserted them into the database.

Domain scan cathedral cath by auto on 24 May 2007 03:17

Adding scan of type "DOMAIN_SCAN_CATHEDRAL_CATH" with 31 results for 2i6cA00

Cathedral cath submit by auto on 24 May 2007 02:40

The entry "2i6cA00" has been submitted to the CATHEDRAL webservice.

Flow stage update by auto on 24 May 2007 02:40

The entry "2i6cA00" has been submitted to the CATHEDRAL webservice.

Flow stage update by auto on 24 May 2007 02:28

ScanList with 8763 domains written to "/cath/data/current/scanlists/cathdb_current.fletcher/2i6cA00.scanlist" for "2i6cA00"

Write scan list by auto on 24 May 2007 02:27

Writing ScanList containing 8763 domains to file "/cath/data/current/scanlists/cathdb_current.fletcher/2i6cA00.scanlist" for domain "2i6cA00"

Flow stage update by auto on 24 May 2007 02:10

No satisfactory AssignClose result found.

Flow stage update by auto on 14 May 2007 10:03

No in_process hits for Domain "2i6cA00" ready to be processed

Flow stage update by auto on 14 May 2007 10:03

NW result present for Domain "2i6cA00"

Flow stage update by auto on 10 May 2007 21:59

All required files are present for Domain "2i6cA00"

Flow stage update by auto on 10 May 2007 14:08

Beginning processing for Domain "2i6cA00"

Insertion by cuff on 10 May 2007 12:32

good chopping