CATH Domain: 2hr3A01 XML data for domain: 2hr3A01

Molscript image for 2hr3A01
2hr3A01
PDB coordinates for domain 2hr3A01

PDB 2hr3, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.5 Single alpha-helices involved in coiled-coils or other helix-helix interfaces
1.20.5.420 Immunoglobulin FC, subunit C Gene3D
1.20.5.420.12
1.20.5.420.12.1
1.20.5.420.12.1.1
1.20.5.420.12.1.1.1
1.20.5.420.12.1.1.1.1

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Segment boundaries for domain 2hr3A01

Chopping figure for domain 2hr3A01
DomainStart PDB ResidueStop PDB Residue
2hr3A01 2 31
2hr3A02 32 97
2hr3A03 98 146

Structural Neighbourhood (53 entries)

There are 53 matching structural neighberhood comparisons for CATH ID 1.20.5.420.12.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 53 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1omiA02 88.45 Listeria monocytogenesListeriolysin regulatory protein 1.20.5.460 27 3 76 1.30 1.70
1fdoA05 88.24 Methane metabolismMetabolic pathwaysGlyoxylate and dicarboxylate metabolismFormate dehydrogenase HFormate dehydrogenase, alpha subunit [EC:1.2.1.2] 1.20.5.460 27 18 83 1.82 2.18
1kmiZ01 87.20 Bacterial chemotaxisChemotaxis protein cheZProtein bindingChemotaxis protein CheZEscherichia coli K-12 1.20.5.590 30 3 80 1.92 2.40
2qjyC01 86.30 Oxidative phosphorylationMetabolic pathwaysRhodobacter sphaeroidesUbiquinol-cytochrome c reductase iron-sulfur subunitUbiquinol-cytochrome c reductase iron-sulfur subunit [EC:1.10.2.2] 1.20.5.510 33 3 81 2.17 2.65
1ozhA03 86.15 Acetolactate synthase, catabolicKlebsiella pneumoniae 1.20.5.740 24 16 80 2.42 3.02
2p10B02 85.84 Mesorhizobium lotiMll9387 protein 1.20.5.460 26 11 83 1.68 2.02
1vf5C03 85.71 Mastigocladus laminosusApocytochrome f 1.20.5.700 32 6 84 1.82 2.16
1jekA00 85.65 Visna/maedi virus EV1 KV1772Envelope glycoprotein gp160 1.20.5.440 40 13 75 1.78 2.37
1s5lX00 85.57 Photosystem II reaction center X proteinThermosynechococcus elongatus BP-1 1.20.5.510 40 6 75 1.72 2.29
1kilE00 85.21 Complexin-1Syntaxin-1 bindingRattus norvegicusDendriteSynaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex 1.20.5.580 41 10 70 2.15 3.04
1r8eA03 84.71 Multidrug-efflux transporter 1 regulatorBacillus subtilis 1.20.5.490 44 6 68 1.69 2.48
1wa9B03 84.17 Regulation of circadian sleep/wake cycle, sleepPeriod circadian proteinNucleusResponse to temperature stimulusNegative regulation of transcription from RNA polymerase II promoter 1.20.5.770 33 10 78 2.82 3.58
1go9A00 84.06 1.20.5.480 39 10 66 1.27 1.91
1hf9A00 83.71 Protein homodimerization activityNegative regulation of hydrolase activityATPase inhibitor activityBos taurusATPase binding 1.20.5.500 41 10 65 1.34 2.03
1kv4A00 83.37 Moricin-1Bombyx mori 1.20.5.750 42 0 71 2.05 2.87
3effK02 83.36 Streptomyces lividansVoltage-gated potassium channel 1.20.5.440 45 10 66 1.68 2.52
3c8vA04 83.25 Desulfovibrio desulfuricans subsp. desulfuricans str. G20Putative uncharacterized protein 1.20.5.510 19 21 63 0.83 1.31
2g3aA01 83.05 Agrobacterium tumefaciens str. C58Acetyltransferase 1.20.5.540 31 0 77 3.41 4.40
1jb0J00 83.00 PhotosynthesisPhotosystem I subunit IXPhotosystem I reaction center subunit IXThermosynechococcus elongatus BP-1Metabolic pathways 1.20.5.510 41 13 73 3.36 4.59
1mqsB00 82.66 Vesicle fusionSyntaxin 5SNAP receptor activityER to Golgi vesicle-mediated transportRetrograde vesicle-mediated transport, Golgi to ER 1.20.5.460 26 11 73 1.62 2.21
1ow6A01 82.65 Focal adhesion kinase 1Focal adhesionCytoskeletonIntegrin-mediated signaling pathwayHomo sapiens 1.20.5.540 30 10 66 2.39 3.58
1vl2B03 81.98 Thermotoga maritimaArginine and proline metabolismArgininosuccinate synthase [EC:6.3.4.5]Alanine, aspartate and glutamate metabolismArgininosuccinate synthase 1.20.5.470 30 10 83 3.02 3.62
2k9yA00 81.89 ApoptosisIntegral to plasma membraneEphrin type-A receptor 2Homo sapiensEph receptor A2 [EC:2.7.10.1] 1.20.5.510 41 6 73 2.27 3.10
2zjsE00 81.84 Protein exportBacterial secretion systemThermus thermophilus HB8Preprotein translocase subunit secEPreprotein translocase subunit SecE 1.20.5.1030 46 10 65 2.12 3.25
1ik7A00 80.57 Regulation of proteolysisProtein domain specific bindingHemocyte proliferationPlasma membraneZygotic specification of dorsal/ventral axis 1.20.5.530 52 10 57 1.59 2.76
2qiwA02 80.41 Corynebacterium glutamicumPEP phosphonomutase and related enzymes 1.20.5.510 18 5 60 0.96 1.60
1hj0A00 80.38 Bos taurusThymosin beta-10 1.20.5.520 41 6 73 3.64 4.97
1vl2A03 80.37 Thermotoga maritimaArginine and proline metabolismArgininosuccinate synthase [EC:6.3.4.5]Alanine, aspartate and glutamate metabolismArgininosuccinate synthase 1.20.5.470 32 10 75 3.22 4.29
1h8bB00 80.02 TitinOryctolagus cuniculus 1.20.5.510 23 13 66 2.41 3.62
1ybkA00 79.82 TetrabrachionStaphylothermus marinus 1.20.5.1060 52 6 55 1.64 2.94
1xrdA01 79.54 Light-harvesting complex 1 alpha chainRhodospirillum rubrumLight-harvesting protein B-870 alpha chain 1.20.5.890 43 10 69 2.79 4.00
1gmjD00 79.22 Negative regulation of hydrolase activityProtein homodimerization activityATPase inhibitor activityBos taurusCalmodulin binding 1.20.5.500 56 13 53 1.79 3.34
1e5wA04 78.88 Leukocyte migrationReceptor bindingCytoskeletonMembrane to membrane dockingNucleolus 1.20.5.450 55 10 54 1.70 3.12
1u57A00 78.50 Human immunodeficiency virus type 1 lw12.3 isolateGag polyprotein 1.20.5.760 48 10 62 2.06 3.30
3b4sA02 78.22 Vibrio parahaemolyticusLuxT 1.20.5.830 41 3 51 1.02 1.99
1k04A01 77.99 Focal adhesion kinase 1Focal adhesionIntegrin-mediated signaling pathwayCytoskeletonHomo sapiens 1.20.5.540 38 10 52 2.18 4.14
1l2pA00 77.89 Oxidative phosphorylationMetabolic pathwaysATP synthesis coupled proton transportAnchored to membraneF-type H+-transporting ATPase subunit b [EC:3.6.3.14] 1.20.5.620 61 13 49 1.61 3.27
1d66B02 77.86 Regulatory protein GAL4NucleusSequence-specific DNA binding transcription factor activityTranscription activator activityPositive regulation of transcription by galactose 1.20.5.640 15 20 50 0.32 0.64
3bz1H01 77.67 PhotosynthesisThermosynechococcus elongatus BP-1Photosystem II PsbH proteinPhotosystem II reaction center protein HMetabolic pathways 1.20.5.880 51 3 50 1.83 3.59
1s5lH00 77.04 PhotosynthesisThermosynechococcus elongatus BP-1Photosystem II PsbH proteinPhotosystem II reaction center protein HMetabolic pathways 1.20.5.880 53 10 56 2.14 3.78
1t6aA01 76.66 Geobacillus stearothermophilusRbstp2229 protein 1.20.5.850 43 6 51 2.34 4.57
1ifpA00 76.04 Pseudomonas phage Pf3Capsid protein G8P 1.20.5.440 44 10 52 1.60 3.06
1mkmA02 75.94 Thermotoga maritimaTranscriptional regulator, IclR family 1.20.5.640 14 0 46 0.46 0.99
1uixA00 75.33 Chemokine signaling pathwayRho-associated, coiled-coil containing protein kinase [EC:2.7.11.1]Leukocyte transendothelial migrationWnt signaling pathwayTGF-beta signaling pathway 1.20.5.730 68 16 44 1.92 4.35
2w83C00 75.07 Homo sapiensIntegral to membraneC-Jun-amino-terminal kinase-interacting protein 4SpermatogenesisPositive regulation of cell migration 1.20.5.1000 67 3 44 1.54 3.44
2dw3A01 74.38 Intrinsic membrane protein pufXRhodobacter sphaeroides 2.4.1 1.20.5.920 55 3 52 2.47 4.68
1pl5A00 73.42 Chromatin silencing complexLoss of chromatin silencing involved in replicative cell agingChromatin silencingDouble-strand break repair via nonhomologous end joiningDouble-stranded DNA binding 1.20.5.730 75 10 40 1.81 4.53
1k8vA00 73.01 Neuropeptide FMoniezia expansa 1.20.5.570 39 10 71 3.51 4.89
1onvB00 71.96 CTD phosphatase activityProtein dephosphorylationHomo sapiensRNA polymerase II subunit A C-terminal domain phosphataseDNA-directed RNA polymerase activity 1.20.5.670 21 4 60 2.41 4.02
1y9bA00 70.98 Vibrio choleraePutative uncharacterized protein 1.20.5.780 78 13 37 1.56 4.20
2ga1A01 70.91 Anabaena variabilis ATCC 29413Putative uncharacterized protein 1.20.5.800 29 6 56 2.58 4.55
1m8oB00 68.35 Positive regulation of endothelial cell migrationPlatelet-derived growth factor receptor bindingPositive regulation of endothelial cell proliferationActivation of protein kinase activityRegulation of bone resorption 1.20.5.630 47 6 44 1.65 3.69
2h88D00 66.35 Succinate dehydrogenase (ubiquinone) membrane anchor subunit [EC:1.3.5.1]Citrate cycle (TCA cycle)Oxidative phosphorylationSuccinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrialGallus gallus 1.20.1300.10 101 16 29 1.47 4.95
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Displaying entries 1 to 53 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2hr3A01
PTNQDLQLAAHLRSQVTTLTRRLRREAQAD
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2hr3A01
XPTNQDLQLAAHLRSQVTTLTRRLRREAQAD
BLAST against CATH

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Domain History Events (10)

Domain assigned by auto on 09 Mar 2008 17:24

Assigning to "1.20.5.420" based on similarity with "2hr3D01"

Flow stage update by auto on 09 Mar 2008 17:23

No in_process hits for Domain "2hr3A01" ready to be processed

Update comment by auto on 09 Mar 2008 17:21

Domain "2hr3A01" hits Domain "2hr3C01" (96.7741935483871% over 100%) which is currently in process

Update comment by auto on 09 Mar 2008 17:08

Domain "2hr3A01" hits Domain "2hr3B01" (96.7741935483871% over 100%) which is currently in process

Update comment by auto on 06 Sep 2007 14:06

Domain "2hr3A01" hits Domain "2hr3D01" (96.7741935483871% over 100%) which is currently in process

Flow stage update by auto on 06 Sep 2007 14:06

Domain "2hr3A01" hits Domain "2hr3D01" (96.7741935483871% over 100%) which is currently in process

Flow stage update by auto on 06 Sep 2007 14:06

NW result present for Domain "2hr3A01"

Flow stage update by auto on 04 Sep 2007 14:04

All required files are present for Domain "2hr3A01"

Flow stage update by auto on 03 Sep 2007 20:09

Beginning processing for Domain "2hr3A01"

Insertion by auto on 03 Sep 2007 18:04

Final ChopClose added based on similarity with "2hr3B"