CATH Domain: 2hjsA02 XML data for domain: 2hjsA02

Molscript image for 2hjsA02
2hjsA02
PDB coordinates for domain 2hjsA02

PDB 2hjs, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.360 Dihydrodipicolinate Reductase; domain 2
3.30.360.10 Dihydrodipicolinate Reductase; domain 2 Gene3D
3.30.360.10.12
3.30.360.10.12.1
3.30.360.10.12.1.1
3.30.360.10.12.1.1.1
3.30.360.10.12.1.1.1.1

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Segment boundaries for domain 2hjsA02

Chopping figure for domain 2hjsA02
DomainStart PDB ResidueStop PDB Residue
2hjsA01 3 130
2hjsA01 315 336
2hjsA02 131 314

Structural Neighbourhood (1 entries)

There are 1 matching structural neighberhood comparisons for CATH ID 3.30.360.10.12.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 1 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1t4bA02 84.38 Glycine, serine and threonine metabolismLysine biosynthesisMetabolic pathwaysCysteine and methionine metabolismAspartate-semialdehyde dehydrogenase activity 3.30.360.10 216 20 84 2.00 2.36
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Displaying entries 1 to 1 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2hjsA02
AVAAELCEVLAPLLATLDCRQLNLTACLSVSSLGREGVKELARQTAELLNARPLEPRLFDRQIAFNLLAQVGAVDAEGHS
AIERRIFAEVQALLGERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDATKGIEWVGEGDYPTVVGDALGQD
ETYVGRVRAGQADPCQVNLWIVSD
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2hjsA02
AVAAELCEVLAPLLATLDCRQLNLTACLSVSSLGREGVKELARQTAELLNARPLEPRLFDRQIAFNLLAQVGAVDAEGHS
AIERRIFAEVQALLGERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDATKGIEWVGEGDYPTVVGDALGQD
ETYVGRVRAGQADPCQVNLWIVSD
BLAST against CATH

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Domain History Events (218)

Domain assigned by cuff on 04 Feb 2008 13:56

all evidence suggests same superfamily

Domain assignment manual match h by tronnberg on 26 Nov 2007 09:35

Same superfamily

Homcheck review by tronnberg on 26 Nov 2007 09:35

Same superfamily

Flow stage update by tronnberg on 26 Nov 2007 09:35

Same superfamily

Homcheck return by cuff on 19 Nov 2007 11:45

nice SSAP and HMM scores. SCOP places both proteins in same families. Sequence similarity not bad at 20. Same superfamily

Flow stage update by cuff on 19 Nov 2007 11:45

nice SSAP and HMM scores. SCOP places both proteins in same families. Sequence similarity not bad at 20. Same superfamily

Domain scan prc pfamcath by auto on 25 Sep 2007 12:35

Adding scan of type "DOMAIN_SCAN_PRC_PFAMCATH" with 8 results for 2hjsA02

Domain assignment manual match t by tronnberg on 28 Aug 2007 15:39

SSAP= 84, OV= 84, Seq= 20. Similar linkage.

Homcheck review by tronnberg on 28 Aug 2007 15:39

SSAP= 84, OV= 84, Seq= 20. Similar linkage.

Flow stage update by tronnberg on 28 Aug 2007 15:39

SSAP= 84, OV= 84, Seq= 20. Similar linkage.

Homcheck allotment by tronnberg on 28 Aug 2007 15:37

User 'tronnberg' has allocated a domain to themselves for HomChecking with comment : Grabbed this domain via HomCheck's "Get Me A Domain" button.

Flow stage update by tronnberg on 28 Aug 2007 15:37

User 'tronnberg' has allocated a domain to themselves for HomChecking with comment : Grabbed this domain via HomCheck's "Get Me A Domain" button.

Flow stage update by auto on 25 Aug 2007 15:02

Domain "2hjsA02" SCOP scan with no results - no SCOP mapping

Domain scan scop cath by auto on 25 Aug 2007 15:02

Adding scan of type "DOMAIN_SCAN_SCOP_CATH" with 0 results for 2hjsA02

Flow stage update by auto on 25 Aug 2007 14:51

Retrieved PRC_PFAMCATH results for job ID SID8071561270514260 and results inserted.

Update comment by auto on 25 Aug 2007 07:05

PRC_PFAMCATH job SID8071561270514260 is not yet finished.

Flow stage update by auto on 25 Aug 2007 07:02

The entry "2hjsA02" has been submitted to the PRC_PFAMCATH webservice.

Prc pfamcath submit by auto on 25 Aug 2007 07:02

The entry "2hjsA02" has been submitted to the PRC_PFAMCATH webservice.

Flow stage update by auto on 25 Aug 2007 06:27

Retrieved SSAP results for job ID SID1035869417449344 and results inserted.

Domain scan ssap cath by auto on 25 Aug 2007 06:25

Adding scan of type "DOMAIN_SCAN_SSAP_CATH" with 451 results for 2hjsA02

Update comment by auto on 23 Aug 2007 22:42

SSAP job SID1035869417449344 is not yet finished.

Ssap cath submit by auto on 23 Aug 2007 22:31

The entry "2hjsA02" has been submitted to the SSAP webservice.

Flow stage update by auto on 23 Aug 2007 22:31

The entry "2hjsA02" has been submitted to the SSAP webservice.

Flow stage update by auto on 23 Aug 2007 19:33

Giving up on SSAP job SID9048950970482880 because submission time of Tue Aug 21 10:51:12 2007 is more than 172800 seconds older than current time (Thu Aug 23 19:33:21 2007).

Update comment by auto on 21 Aug 2007 11:33

SSAP job SID9048950970482880 is not yet finished.

Ssap cath submit by auto on 21 Aug 2007 10:51

The entry "2hjsA02" has been submitted to the SSAP webservice.

Flow stage update by auto on 21 Aug 2007 10:51

The entry "2hjsA02" has been submitted to the SSAP webservice.

Flow stage update by auto on 21 Aug 2007 08:12

Giving up on SSAP job SID4558244758835528 because submission time of Sun Aug 19 07:29:03 2007 is more than 172800 seconds older than current time (Tue Aug 21 08:12:10 2007).

Update comment by auto on 19 Aug 2007 08:23

SSAP job SID4558244758835528 is not yet finished.

Ssap cath submit by auto on 19 Aug 2007 07:29

The entry "2hjsA02" has been submitted to the SSAP webservice.

Flow stage update by auto on 19 Aug 2007 07:29

The entry "2hjsA02" has been submitted to the SSAP webservice.

Flow stage update by auto on 19 Aug 2007 03:30

Giving up on SSAP job SID0102336584726144 because submission time of Thu Aug 16 23:21:47 2007 is more than 172800 seconds older than current time (Sun Aug 19 03:30:29 2007).

Update comment by auto on 17 Aug 2007 00:31

SSAP job SID0102336584726144 is not yet finished.

Flow stage update by auto on 16 Aug 2007 23:21

The entry "2hjsA02" has been submitted to the SSAP webservice.

Ssap cath submit by auto on 16 Aug 2007 23:21

The entry "2hjsA02" has been submitted to the SSAP webservice.

Flow stage update by auto on 16 Aug 2007 18:29

Giving up on SSAP job SID6903702994884758 because submission time of Tue Aug 14 08:55:13 2007 is more than 172800 seconds older than current time (Thu Aug 16 18:29:08 2007).

Update comment by auto on 14 Aug 2007 10:29

SSAP job SID6903702994884758 is not yet finished.

Flow stage update by auto on 14 Aug 2007 08:55

The entry "2hjsA02" has been submitted to the SSAP webservice.

Ssap cath submit by auto on 14 Aug 2007 08:55

The entry "2hjsA02" has been submitted to the SSAP webservice.

Flow stage update by auto on 14 Aug 2007 05:36

Retrieved PRC results for job ID SID7932766483054944 and inserted them into the database.

Domain scan prc cath by auto on 14 Aug 2007 05:35

Adding scan of type "DOMAIN_SCAN_PRC_CATH" with 4 results for 2hjsA02

Prc cath submit by auto on 13 Aug 2007 10:20

The entry "2hjsA02" has been submitted to the PRC webservice.

Flow stage update by auto on 13 Aug 2007 10:20

The entry "2hjsA02" has been submitted to the PRC webservice.

Flow stage update by auto on 13 Aug 2007 07:03

Retrieved HMM(SAM) results for job ID SID1354277917198650 and inserted them into the database.

Domain scan sam cath by auto on 13 Aug 2007 07:02

Adding scan of type "DOMAIN_SCAN_SAM_CATH" with 3 results for 2hjsA02

Update comment by auto on 12 Aug 2007 13:01

HMM(SAM) job SID1354277917198650 is not yet finished.

Sam cath submit by auto on 12 Aug 2007 11:43

The entry "2hjsA02" has been submitted to the HMM (SAM) webservice.

Flow stage update by auto on 12 Aug 2007 11:43

The entry "2hjsA02" has been submitted to the HMM (SAM) webservice.

Flow stage update by auto on 12 Aug 2007 02:34

Retrieved "2hjsA02" CATHEDRAL results for job ID SID3996003494794496 and inserted them into the database.

Domain scan cathedral cath by auto on 12 Aug 2007 02:32

Adding scan of type "DOMAIN_SCAN_CATHEDRAL_CATH" with 685 results for 2hjsA02

Update comment by auto on 11 Aug 2007 05:46

"2hjsA02" CATHEDRAL job SID3996003494794496 is not yet finished.

Flow stage update by auto on 11 Aug 2007 04:10

The entry "2hjsA02" has been submitted to the CATHEDRAL webservice.

Cathedral cath submit by auto on 11 Aug 2007 04:10

The entry "2hjsA02" has been submitted to the CATHEDRAL webservice.

Flow stage update by auto on 11 Aug 2007 02:06

ScanList with 9778 domains written to "/cath/data/current/scanlists/cathdb_current.fletcher/2hjsA02.scanlist" for "2hjsA02"

Write scan list by auto on 11 Aug 2007 02:06

Writing ScanList containing 9778 domains to file "/cath/data/current/scanlists/cathdb_current.fletcher/2hjsA02.scanlist" for domain "2hjsA02"

Update comment by auto on 10 Aug 2007 14:31

Waiting for 984 new domains (example : 1h4uA00) to be processed so that they can be scanned against too.

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Update comment by auto on 31 Jul 2007 22:41

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Waiting for 4386 new domains (example : 1gviA01) to be processed so that they can be scanned against too.

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Waiting for 4468 new domains (example : 1gviA01) to be processed so that they can be scanned against too.

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Waiting for 4857 new domains (example : 1gviA01) to be processed so that they can be scanned against too.

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Waiting for 7989 new domains (example : 1gviA01) to be processed so that they can be scanned against too.

Update comment by auto on 20 Jul 2007 03:13

Waiting for 8046 new domains (example : 1gviA01) to be processed so that they can be scanned against too.

Update comment by auto on 19 Jul 2007 23:25

Waiting for 8061 new domains (example : 1gviA01) to be processed so that they can be scanned against too.

Update comment by auto on 19 Jul 2007 19:54

Waiting for 8094 new domains (example : 1gviA01) to be processed so that they can be scanned against too.

Update comment by auto on 19 Jul 2007 15:58

Waiting for 8122 new domains (example : 1gviA01) to be processed so that they can be scanned against too.

Update comment by auto on 19 Jul 2007 11:45

Waiting for 8167 new domains (example : 1gviA01) to be processed so that they can be scanned against too.

Update comment by auto on 19 Jul 2007 07:24

Waiting for 8211 new domains (example : 1gviA01) to be processed so that they can be scanned against too.

Update comment by auto on 19 Jul 2007 03:43

Waiting for 8242 new domains (example : 1gviA01) to be processed so that they can be scanned against too.

Update comment by auto on 18 Jul 2007 23:05

Waiting for 8273 new domains (example : 1gviA01) to be processed so that they can be scanned against too.

Update comment by auto on 18 Jul 2007 19:23

Waiting for 8325 new domains (example : 1gviA01) to be processed so that they can be scanned against too.

Update comment by auto on 18 Jul 2007 15:17

Waiting for 8374 new domains (example : 1gviA01) to be processed so that they can be scanned against too.

Update comment by auto on 18 Jul 2007 11:40

Waiting for 8395 new domains (example : 1gviA01) to be processed so that they can be scanned against too.

Update comment by auto on 18 Jul 2007 07:38

Waiting for 8394 new domains (example : 1gviA01) to be processed so that they can be scanned against too.

Update comment by auto on 18 Jul 2007 02:59

Waiting for 8379 new domains (example : 1g1yB02) to be processed so that they can be scanned against too.

Update comment by auto on 17 Jul 2007 22:15

Waiting for 8343 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.

Update comment by auto on 17 Jul 2007 16:20

Waiting for 8284 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.

Update comment by auto on 17 Jul 2007 11:21

Waiting for 8221 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.

Update comment by auto on 17 Jul 2007 07:26

Waiting for 8152 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.

Update comment by auto on 17 Jul 2007 03:27

Waiting for 8083 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.

Update comment by auto on 16 Jul 2007 23:08

Waiting for 8009 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.

Update comment by auto on 16 Jul 2007 19:34

Waiting for 7928 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.

Update comment by auto on 16 Jul 2007 15:50

Waiting for 7841 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.

Update comment by auto on 16 Jul 2007 11:08

Waiting for 7749 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.

Update comment by auto on 16 Jul 2007 06:48

Waiting for 7631 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.

Update comment by auto on 16 Jul 2007 04:53

Waiting for 7496 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.

Update comment by auto on 16 Jul 2007 01:31

Waiting for 7325 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.

Update comment by auto on 15 Jul 2007 23:03

Waiting for 7146 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.

Update comment by auto on 15 Jul 2007 19:51

Waiting for 6928 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.

Update comment by auto on 15 Jul 2007 15:42

Waiting for 6694 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.

Update comment by auto on 15 Jul 2007 12:07

Waiting for 6438 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.

Update comment by auto on 15 Jul 2007 07:33

Waiting for 6152 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.

Update comment by auto on 15 Jul 2007 03:37

Waiting for 5796 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.

Update comment by auto on 14 Jul 2007 23:23

Waiting for 5384 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.

Update comment by auto on 14 Jul 2007 21:24

Waiting for 4906 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.

Update comment by auto on 14 Jul 2007 18:14

Waiting for 4380 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.

Update comment by auto on 14 Jul 2007 13:07

Waiting for 3708 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.

Update comment by auto on 14 Jul 2007 06:14

Waiting for 2933 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.

Update comment by auto on 13 Jul 2007 19:05

Waiting for 1961 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.

Flow stage update by auto on 13 Jul 2007 18:50

No satisfactory AssignClose result found.

Flow stage update by auto on 13 Jul 2007 18:43

No in_process hits for Domain "2hjsA02" ready to be processed

Flow stage update by auto on 13 Jul 2007 18:43

NW result present for Domain "2hjsA02"

Flow stage update by auto on 10 Jul 2007 02:18

All required files are present for Domain "2hjsA02"

Flow stage update by auto on 09 Jul 2007 14:54

Beginning processing for Domain "2hjsA02"

Insertion by cuff on 09 Jul 2007 14:13

nice chopping