Domain assigned by cuff on 21 Feb 2008 12:20
same superfamily
CATH Domain: 2hf1A01
2hf1A01
PDB 2hf1, Chain A, Domain 1
| CATH Code | Level Description | Links |
|---|---|---|
 2
| Mainly Beta | |
 2.20
| Single Sheet | |
 2.20.25
| N-terminal domain of TfIIb | |
 2.20.25.10
| Gene3D | |
 2.20.25.10.2
| ||
 2.20.25.10.2.1
| ||
 2.20.25.10.2.1.1
| ||
 2.20.25.10.2.1.1.1
| ||
 2.20.25.10.2.1.1.1.1
|
Structural Neighbourhood (4 entries)
There are 4 matching structural neighberhood comparisons for CATH ID 2.20.25.10.2.1.1.1.1 (SIMAX score < 5)
[1]
Displaying entries 1 to 4 (page 1 of 1)
| Match Depth | Match | SSAP score | Match Keywords | Match Superfamily | Length | Sequence Id | Overlap | RMSD | SIMAX |
|---|---|---|---|---|---|---|---|---|---|
|
2js4A01 | 87.91 | 2.20.25.10 | 47 | 59 | 84 | 1.56 | 1.84 | |
|
1yuaA02 | 78.43 | 2.20.25.10 | 58 | 3 | 70 | 2.77 | 3.92 | |
|
1qypA00 | 76.18 | 2.20.25.10 | 57 | 7 | 57 | 2.72 | 4.70 | |
|
1y1vS01 | 72.26 | 2.20.25.10 | 70 | 7 | 45 | 2.03 | 4.44 |
[1]
Displaying entries 1 to 4 (page 1 of 1)
Domain History Events (206)
Homcheck comment by rupa on 11 Sep 2007 11:32
After further review this still appears to be the most suitable choice.
Domain assignment manual match h by rupa on 20 Aug 2007 16:47
Good cathedral and ssap score, same folding, both interact with RNA.
Homcheck review by rupa on 20 Aug 2007 16:47
Good cathedral and ssap score, same folding, both interact with RNA.
Flow stage update by rupa on 20 Aug 2007 16:47
Good cathedral and ssap score, same folding, both interact with RNA.
Homcheck allotment by rupa on 20 Aug 2007 16:45
User 'rupa' has allocated a domain to themselves for HomChecking with comment : Grabbed this domain via HomCheck's "Get Me A Domain" button.
Flow stage update by rupa on 20 Aug 2007 16:45
User 'rupa' has allocated a domain to themselves for HomChecking with comment : Grabbed this domain via HomCheck's "Get Me A Domain" button.
Flow stage update by auto on 20 Aug 2007 12:03
Domain "2hf1A01" SCOP scan with no results - no SCOP mapping
Domain scan scop cath by auto on 20 Aug 2007 12:02
Adding scan of type "DOMAIN_SCAN_SCOP_CATH" with 0 results for 2hf1A01
Flow stage update by auto on 20 Aug 2007 04:12
Retrieved PRC_PFAMCATH results for job ID SID3380422875076992 and chopping inserted.
Domain scan prc pfamcath by auto on 20 Aug 2007 04:11
Adding scan of type "DOMAIN_SCAN_PRC_PFAMCATH" with 1 results for 2hf1A01
Update comment by auto on 19 Aug 2007 19:36
PRC_PFAMCATH job SID3380422875076992 is not yet finished.
Prc pfamcath submit by auto on 19 Aug 2007 19:32
The entry "2hf1A01" has been submitted to the PRC_PFAMCATH webservice.
Flow stage update by auto on 19 Aug 2007 19:32
The entry "2hf1A01" has been submitted to the PRC_PFAMCATH webservice.
Flow stage update by auto on 19 Aug 2007 15:27
Giving up on PRC_PFAMCATH job SID5324881743330336 because submission time of Fri Aug 17 13:18:15 2007 is more than 172800 seconds older than current time (Sun Aug 19 15:27:47 2007).
Update comment by auto on 17 Aug 2007 13:21
PRC_PFAMCATH job SID5324881743330336 is not yet finished.
Prc pfamcath submit by auto on 17 Aug 2007 13:18
The entry "2hf1A01" has been submitted to the PRC_PFAMCATH webservice.
Flow stage update by auto on 17 Aug 2007 13:18
The entry "2hf1A01" has been submitted to the PRC_PFAMCATH webservice.
Flow stage update by auto on 17 Aug 2007 12:24
Retrieved SSAP results for job ID SID2219327661363776 and chopping inserted.
Domain scan ssap cath by auto on 17 Aug 2007 12:22
Adding scan of type "DOMAIN_SCAN_SSAP_CATH" with 1250 results for 2hf1A01
Update comment by auto on 16 Aug 2007 23:39
SSAP job SID2219327661363776 is not yet finished.
Ssap cath submit by auto on 16 Aug 2007 22:34
The entry "2hf1A01" has been submitted to the SSAP webservice.
Flow stage update by auto on 16 Aug 2007 22:34
The entry "2hf1A01" has been submitted to the SSAP webservice.
Flow stage update by auto on 16 Aug 2007 17:28
Giving up on SSAP job SID1860640239457632 because submission time of Tue Aug 14 08:53:20 2007 is more than 172800 seconds older than current time (Thu Aug 16 17:28:54 2007).
Update comment by auto on 14 Aug 2007 10:28
SSAP job SID1860640239457632 is not yet finished.
Flow stage update by auto on 14 Aug 2007 08:53
The entry "2hf1A01" has been submitted to the SSAP webservice.
Ssap cath submit by auto on 14 Aug 2007 08:53
The entry "2hf1A01" has been submitted to the SSAP webservice.
Flow stage update by auto on 14 Aug 2007 05:23
Retrieved PRC results for job ID SID0109794273434104 and inserted them into the database.
Domain scan prc cath by auto on 14 Aug 2007 05:23
Adding scan of type "DOMAIN_SCAN_PRC_CATH" with 1 results for 2hf1A01
Flow stage update by auto on 13 Aug 2007 10:18
The entry "2hf1A01" has been submitted to the PRC webservice.
Prc cath submit by auto on 13 Aug 2007 10:17
The entry "2hf1A01" has been submitted to the PRC webservice.
Flow stage update by auto on 13 Aug 2007 06:52
Retrieved HMM(SAM) results for job ID SID2103275423346764 and inserted them into the database.
Domain scan sam cath by auto on 13 Aug 2007 06:51
Adding scan of type "DOMAIN_SCAN_SAM_CATH" with 1 results for 2hf1A01
Update comment by auto on 12 Aug 2007 13:00
HMM(SAM) job SID2103275423346764 is not yet finished.
Sam cath submit by auto on 12 Aug 2007 11:42
The entry "2hf1A01" has been submitted to the HMM (SAM) webservice.
Flow stage update by auto on 12 Aug 2007 11:42
The entry "2hf1A01" has been submitted to the HMM (SAM) webservice.
Flow stage update by auto on 12 Aug 2007 02:15
Retrieved "2hf1A01" CATHEDRAL results for job ID SID6171878031281712 and inserted them into the database.
Domain scan cathedral cath by auto on 12 Aug 2007 02:14
Adding scan of type "DOMAIN_SCAN_CATHEDRAL_CATH" with 156 results for 2hf1A01
Update comment by auto on 11 Aug 2007 05:45
"2hf1A01" CATHEDRAL job SID6171878031281712 is not yet finished.
Cathedral cath submit by auto on 11 Aug 2007 04:08
The entry "2hf1A01" has been submitted to the CATHEDRAL webservice.
Flow stage update by auto on 11 Aug 2007 04:08
The entry "2hf1A01" has been submitted to the CATHEDRAL webservice.
Flow stage update by auto on 11 Aug 2007 02:01
ScanList with 9778 domains written to "/cath/data/current/scanlists/cathdb_current.fletcher/2hf1A01.scanlist" for "2hf1A01"
Write scan list by auto on 11 Aug 2007 02:01
Writing ScanList containing 9778 domains to file "/cath/data/current/scanlists/cathdb_current.fletcher/2hf1A01.scanlist" for domain "2hf1A01"
Update comment by auto on 10 Aug 2007 14:31
Waiting for 984 new domains (example : 1h4uA00) to be processed so that they can be scanned against too.
Update comment by auto on 10 Aug 2007 10:31
Waiting for 1052 new domains (example : 1h4uA00) to be processed so that they can be scanned against too.
Update comment by auto on 10 Aug 2007 06:44
Waiting for 1095 new domains (example : 1h4uA00) to be processed so that they can be scanned against too.
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Update comment by auto on 09 Aug 2007 22:31
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Update comment by auto on 09 Aug 2007 19:12
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Update comment by auto on 09 Aug 2007 14:56
Waiting for 1336 new domains (example : 1t6pF01) to be processed so that they can be scanned against too.
Update comment by auto on 09 Aug 2007 10:56
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Update comment by auto on 09 Aug 2007 02:49
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Update comment by auto on 08 Aug 2007 22:32
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Update comment by auto on 08 Aug 2007 18:41
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Update comment by auto on 08 Aug 2007 06:48
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Update comment by auto on 08 Aug 2007 02:55
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Update comment by auto on 07 Aug 2007 22:43
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Update comment by auto on 07 Aug 2007 19:30
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Update comment by auto on 07 Aug 2007 15:12
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Update comment by auto on 07 Aug 2007 10:41
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Update comment by auto on 07 Aug 2007 02:47
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Update comment by auto on 06 Aug 2007 22:35
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Update comment by auto on 06 Aug 2007 18:48
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Update comment by auto on 06 Aug 2007 14:42
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Update comment by auto on 06 Aug 2007 11:20
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Update comment by auto on 06 Aug 2007 09:15
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Update comment by auto on 06 Aug 2007 02:12
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Update comment by auto on 05 Aug 2007 19:02
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Update comment by auto on 05 Aug 2007 07:18
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Update comment by auto on 05 Aug 2007 03:10
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Update comment by auto on 04 Aug 2007 22:48
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Update comment by auto on 04 Aug 2007 19:04
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Update comment by auto on 04 Aug 2007 15:07
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Update comment by auto on 04 Aug 2007 11:06
Waiting for 3098 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 04 Aug 2007 06:57
Waiting for 3152 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 04 Aug 2007 03:06
Waiting for 3197 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 03 Aug 2007 22:53
Waiting for 3216 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 03 Aug 2007 19:50
Waiting for 3206 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 03 Aug 2007 15:46
Waiting for 3198 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 03 Aug 2007 10:57
Waiting for 3055 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 03 Aug 2007 06:59
Waiting for 3126 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 03 Aug 2007 02:58
Waiting for 3204 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 02 Aug 2007 22:44
Waiting for 3254 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 02 Aug 2007 19:27
Waiting for 3282 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 02 Aug 2007 15:20
Waiting for 3339 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 02 Aug 2007 11:01
Waiting for 3395 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 02 Aug 2007 07:01
Waiting for 3471 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
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Waiting for 3542 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 01 Aug 2007 22:42
Waiting for 3606 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 01 Aug 2007 19:30
Waiting for 3650 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 01 Aug 2007 15:02
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Update comment by auto on 01 Aug 2007 10:53
Waiting for 3800 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 01 Aug 2007 06:54
Waiting for 3884 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 01 Aug 2007 02:59
Waiting for 3939 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 31 Jul 2007 22:40
Waiting for 3997 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 31 Jul 2007 18:58
Waiting for 4076 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 31 Jul 2007 14:49
Waiting for 4166 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 31 Jul 2007 11:07
Waiting for 4233 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 31 Jul 2007 07:23
Waiting for 4307 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 31 Jul 2007 03:27
Waiting for 4386 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 30 Jul 2007 23:30
Waiting for 4468 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 30 Jul 2007 19:51
Waiting for 4553 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 30 Jul 2007 16:24
Waiting for 4605 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 30 Jul 2007 10:02
Waiting for 4715 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 30 Jul 2007 02:29
Waiting for 4857 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 29 Jul 2007 11:32
Waiting for 4966 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 29 Jul 2007 07:31
Waiting for 5043 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 29 Jul 2007 03:29
Waiting for 5108 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 29 Jul 2007 00:39
Waiting for 5134 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 28 Jul 2007 19:12
Waiting for 5205 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 28 Jul 2007 15:06
Waiting for 5292 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 28 Jul 2007 11:07
Waiting for 5345 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 28 Jul 2007 07:09
Waiting for 5411 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
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Waiting for 5495 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 27 Jul 2007 22:48
Waiting for 5546 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 27 Jul 2007 19:07
Waiting for 5622 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 27 Jul 2007 15:00
Waiting for 5708 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
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Waiting for 5804 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
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Waiting for 5906 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 27 Jul 2007 02:49
Waiting for 5998 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 26 Jul 2007 23:16
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Update comment by auto on 26 Jul 2007 19:38
Waiting for 6072 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 26 Jul 2007 16:01
Waiting for 6103 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
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Waiting for 6282 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 25 Jul 2007 15:34
Waiting for 6426 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 25 Jul 2007 11:17
Waiting for 6496 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
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Waiting for 6650 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
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Waiting for 6699 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
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Waiting for 6753 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
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Waiting for 6895 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
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Waiting for 7358 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
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Waiting for 7386 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
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Waiting for 7442 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
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Waiting for 7562 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
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Waiting for 7684 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
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Waiting for 7778 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 20 Jul 2007 23:32
Waiting for 7804 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
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Waiting for 7838 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
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Waiting for 7954 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
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Waiting for 7989 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
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Waiting for 8046 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 19 Jul 2007 23:24
Waiting for 8061 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
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Waiting for 8122 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
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Waiting for 8167 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
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Update comment by auto on 18 Jul 2007 23:05
Waiting for 8273 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
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Waiting for 8325 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
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Waiting for 8394 new domains (example : 1gviA01) to be processed so that they can be scanned against too.
Update comment by auto on 18 Jul 2007 02:58
Waiting for 8379 new domains (example : 1g1yB02) to be processed so that they can be scanned against too.
Update comment by auto on 17 Jul 2007 22:13
Waiting for 8343 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
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Waiting for 8221 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 17 Jul 2007 07:25
Waiting for 8152 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 17 Jul 2007 03:26
Waiting for 8083 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 16 Jul 2007 23:07
Waiting for 8009 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 16 Jul 2007 19:33
Waiting for 7928 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 16 Jul 2007 15:49
Waiting for 7841 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 16 Jul 2007 11:07
Waiting for 7749 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 16 Jul 2007 06:47
Waiting for 7631 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 16 Jul 2007 04:52
Waiting for 7496 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 16 Jul 2007 01:30
Waiting for 7325 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 15 Jul 2007 23:03
Waiting for 7146 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 15 Jul 2007 19:50
Waiting for 6928 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 15 Jul 2007 15:41
Waiting for 6694 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 15 Jul 2007 12:06
Waiting for 6438 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 15 Jul 2007 07:32
Waiting for 6152 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 15 Jul 2007 03:36
Waiting for 5796 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 14 Jul 2007 23:23
Waiting for 5384 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 14 Jul 2007 21:24
Waiting for 4906 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 14 Jul 2007 18:14
Waiting for 4380 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 14 Jul 2007 13:06
Waiting for 3708 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 14 Jul 2007 06:13
Waiting for 2933 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 13 Jul 2007 19:05
Waiting for 1961 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Flow stage update by auto on 13 Jul 2007 18:50
No satisfactory AssignClose result found.
Flow stage update by auto on 13 Jul 2007 18:43
No in_process hits for Domain "2hf1A01" ready to be processed
Flow stage update by auto on 13 Jul 2007 18:43
NW result present for Domain "2hf1A01"
Flow stage update by auto on 07 Jul 2007 20:00
All required files are present for Domain "2hf1A01"
Flow stage update by auto on 06 Jul 2007 14:25
Beginning processing for Domain "2hf1A01"
Insertion by cuff on 06 Jul 2007 12:05
nice chopping
